PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g027450.1 | ||||||||
Common Name | MTR_6g027450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 330aa MW: 36633.5 Da PI: 8.1234 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.3 | 5.3e-36 | 85 | 144 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvP G+grr+nk+ Medtr6g027450.1 85 PDKIVQCPRCNSFDTKFCYFNNYNVSQPRHFCRKCHRYWTAGGKMRNVPFGAGRRRNKQI 144 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 73 | 142 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.1E-31 | 87 | 143 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.307 | 89 | 143 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 91 | 127 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MNGEGDICVK NFSIMLFGKK IQPNSSTMNS CSNSKHKGNE MPHIQNIEKS KNSSNEENES 60 KVNTSTVEDN METSSTDQDK VLKKPDKIVQ CPRCNSFDTK FCYFNNYNVS QPRHFCRKCH 120 RYWTAGGKMR NVPFGAGRRR NKQIASQYRH MIVASGGIST SNFESNDSST ESAAVFRCSN 180 NNGIVLKFGP ENESNDSIFN PNNHKRNVDA NANNCRENGD EESSLCLSSL TNGYTRGNEL 240 SESEHNRSKP LQNYSASSWM IPLNQSLNNV TSMVQSSMQM CHPYGVDPSS MQWCHMPNIG 300 LQFVPESFKN GSVSIGSNNC ISPSSSTTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g027450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451512.1 | 0.0 | dof zinc finger protein DOF1.3 | ||||
TrEMBL | A0A072UI93 | 0.0 | A0A072UI93_MEDTR; Dof zinc finger DOF5.2-like protein | ||||
STRING | XP_004489646.1 | 1e-105 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-37 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g027450.1 |
Entrez Gene | 25495811 |
Publications ? help Back to Top | |||
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