PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g027370.1
Common NameMTR_6g027370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 353aa    MW: 39401.3 Da    PI: 9.362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g027370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.2e-1599144147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v ++G+++W+ Ia+ +  gR++k+c++rw + 
  Medtr6g027370.1  99 RGHWRPSEDAKLKKLVDEFGPHNWNNIAEQIH-GRSGKSCRLRWCNQ 144
                      899*****************************.***********985 PP
2Myb_DNA-binding50.74.1e-16152194246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++eE+e+l++a++++G++ W+ I + ++ gRt++ +k++++ 
  Medtr6g027370.1 152 AAFSEEEEEKLLHAHTLHGNK-WSHICKFFP-GRTDNALKNHFHV 194
                      579******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1694145IPR017930Myb domain
SuperFamilySSF466891.95E-2798192IPR009057Homeodomain-like
SMARTSM007178.7E-1398147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-25100152IPR009057Homeodomain-like
PfamPF139214.5E-16102162No hitNo description
CDDcd001677.98E-12102143No hitNo description
PROSITE profilePS5129423.98146200IPR017930Myb domain
SMARTSM007176.1E-13150198IPR001005SANT/Myb domain
CDDcd001672.56E-10153193No hitNo description
Gene3DG3DSA:1.10.10.602.2E-18153199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSSLNLNNDG YGFSLDLNIS SLPSPLPSSS STPLLGHIGN NESRKFKIPF GISNPSVILP  60
NESMVKNNEG NFGDERKNLS MKGYKEENEK FGNTKLSIRG HWRPSEDAKL KKLVDEFGPH  120
NWNNIAEQIH GRSGKSCRLR WCNQLDPRIN RAAFSEEEEE KLLHAHTLHG NKWSHICKFF  180
PGRTDNALKN HFHVIMARKQ RELLSSISRK RKLTFQIPAN NNVASKSAIT SPFDESNSTC  240
TNLNLTTRPL LNYHAYGSQM SLLRERKVEA VDYGFAKICS AMRGCSQGHM GKLKSVDQSN  300
HSYSNSEVSV SESVATNMNN GSILGESENV RDKIKVSFID FLGVGDTYGT FC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-29981993104C-Myb DNA-Binding Domain
1msf_C4e-29981993104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g027370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451507.10.0transcription factor MYB54
TrEMBLA0A072UI900.0A0A072UI90_MEDTR; Myb transcription factor
STRINGXP_004489664.11e-128(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-54myb domain protein 105
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]