PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g027360.1
Common NameMTR_6g027360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 309aa    MW: 34511.9 Da    PI: 9.3271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g027360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.5e-1581124448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      W + Ed++l+++++ +G ++W+ Ia++++ gR++k+c++rw+++l
  Medtr6g027360.1  81 WKPFEDDKLKQLIADHGAKDWNNIAEKLQ-GRSGKSCRLRWLNHL 124
                      9999*************************.*************97 PP
2Myb_DNA-binding45.32e-14130173146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r + ++eE+e l+++++++G++ W+ I+++++ gR ++ +k++++ 
  Medtr6g027360.1 130 REPLSKEEEEMLLQLHTLHGTK-WAHISKHFP-GRRDNALKNHYHV 173
                      56779*****************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.32873128IPR017930Myb domain
SuperFamilySSF466896.25E-2677171IPR009057Homeodomain-like
SMARTSM007171.6E-1377126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2480131IPR009057Homeodomain-like
PfamPF139212.6E-1781141No hitNo description
CDDcd001672.47E-1381124No hitNo description
PROSITE profilePS5129416.617129179IPR017930Myb domain
SMARTSM007171.4E-12129177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-17132175IPR009057Homeodomain-like
CDDcd001671.02E-9134175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSLNLNNDG YGLSLDLKIS LPSQLPSSSS THLQGHVGNN GFEKSKIPFG ISNPLVIQPN  60
ENVVQNNGGS FRNSKLSKAH WKPFEDDKLK QLIADHGAKD WNNIAEKLQG RSGKSCRLRW  120
LNHLDPSIKR EPLSKEEEEM LLQLHTLHGT KWAHISKHFP GRRDNALKNH YHVIKARRQR  180
ELLSSIARKE KLTYEIPAKF AITSPIDESN LNLTRPLPSS QMGLLQKRVV EAEFAKACSA  240
MRELNNVYQM EKLKIADQSN ISDSNSEGST SESAATNMNN NGSILGDSEN VGDKIKMPFF  300
DFLEISDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24761715100B-MYB
1h88_C3e-243717121151MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-243717121151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g027360.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451506.10.0transcription factor MYB54
TrEMBLA0A072U6Z30.0A0A072U6Z3_MEDTR; Myb transcription factor
STRINGXP_004489664.19e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-47myb domain protein 105
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]