PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g027340.1
Common NameMTR_6g027340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 206aa    MW: 23238.2 Da    PI: 10.1016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g027340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161862348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      W + Ed +l+++++ +G ++W+ Ia+ ++ gRt+k+c++rw+++l
  Medtr6g027340.1 18 HWKPSEDAKLKQLIADHGAKNWNNIAEQLQ-GRTGKSCRLRWLNHL 62
                     5*****************************.*************97 PP
2Myb_DNA-binding46.21e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r + ++eE+e l+++++++G++ W+ I+++++ gR ++ +k++++ 
  Medtr6g027340.1  68 REPLSKEEEEMLLQLHTLHGTK-WAHISKHFP-GRRDNALKNHYHV 111
                      56779*****************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0461166IPR017930Myb domain
SMARTSM007173.8E-151564IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-2716109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-261869IPR009057Homeodomain-like
CDDcd001679.28E-151962No hitNo description
PfamPF139219.9E-181979No hitNo description
SMARTSM007171.4E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129416.61767117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-1870113IPR009057Homeodomain-like
CDDcd001675.52E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVQNNGGNFR NTKPSKAHWK PSEDAKLKQL IADHGAKNWN NIAEQLQGRT GKSCRLRWLN  60
HLDPSIKREP LSKEEEEMLL QLHTLHGTKW AHISKHFPGR RDNALKNHYH VIKARRQREL  120
LSSIARKEKL TYEIPAKFAI TSPIDESNLN LTRPLPSSQM DSNSEDSASE PAATNRNNGL  180
ILGDSENVGD KIKMPFFDFL GVGDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25161097100B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g027340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642140.11e-149transcription factor MYB105
TrEMBLA0A072U8V51e-150A0A072U8V5_MEDTR; Myb transcription factor
STRINGGSMUA_Achr5P27750_0014e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-49myb domain protein 105
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]