PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g018920.1
Common NameMTR_6g018920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 347aa    MW: 40448.2 Da    PI: 9.5318
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g018920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.4e-181151343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i+ +  r++tf kR+ng++KK +E S+LCd++v+vi+++++
  Medtr6g018920.1 11 IQKEKSRKTTFQKRKNGLMKKVNEFSILCDVDVCVILYAPN 51
                     778889********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.857161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-21295IPR002100Transcription factor, MADS-box
CDDcd001201.81E-22251No hitNo description
PRINTSPR004045.1E-13323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRGRISMEL IQKEKSRKTT FQKRKNGLMK KVNEFSILCD VDVCVILYAP NFEAQGFVEP  60
ETWPKDKREV QRILQKYYNT TSDRRPKIYD VQEYFKERMK KIKFEISKVR KEKIKMMYPS  120
WDESYNSLGV EQVRSFASML DSKLDACNQR MHMLKGDLKG KTIAHESHKV DILIGNPNLA  180
SKPSSYFNLM QNNMFEAKIH PPLMNINDKT PLGFWQLQLG QSSQPSSMIS NAQSSYYVES  240
QEGRYPQSYP CKQIDVNWAN WANRVDTNVT CDLKIDMKRK DVAENDENLS PYYYNGNAST  300
MQSYPFAMHS LPFQNLSYLP HGFQLNGFND INMLQAHKFN YMDGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g018920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451327.10.0floral homeotic protein AGAMOUS
TrEMBLA0A072U6V50.0A0A072U6V5_MEDTR; MADS-box transcription factor family protein
TrEMBLA0A396HCY50.0A0A396HCY5_MEDTR; Putative transcription factor MADS-type1 family
STRINGXP_004516685.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-27M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]