PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g017055.1 | ||||||||
Common Name | MTR_067s0070, MTR_6g017055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 410aa MW: 46096.2 Da PI: 10.0277 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 146.2 | 2.4e-45 | 124 | 275 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec......ea 75 ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aik+lt++ s++s+s+c ++ Medtr6g017055.1 124 PVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSkqrnnnsevggdakSFTSSSDCedseiaTN 217 68**************************************************************999999999999887777788865554333 PP TCP 76 esssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmri 132 +ss+ +++++++g++ ++++ k+ + +++a +++kesr+karararert++k ++ Medtr6g017055.1 218 NSSNLKQHKEGAGSKHEEKKlKRVQIKEPACVRASKMKESREKARARARERTSNKISN 275 33333333444445555555255555555555667788****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-43 | 125 | 273 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.805 | 126 | 184 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.607 | 255 | 272 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MFPYSSNPYP SFLPSSSSSS SSTSSLFPFP FLNPENASSN NNNNTLFHDP FSIPYIPIHH 60 HPHPNLHNIT NIPETLTNLA ASQENNNNSN NNNNNIAIPM PKQDPSSLGG GSHYGISCFL 120 AKKPVKKDRH SKIYTSQGLR DRRVRLSIEI ARKFFDLQDM LGFDKASNTL DWLFTKSKKA 180 IKDLTKSKQR NNNSEVGGDA KSFTSSSDCE DSEIATNNSS NLKQHKEGAG SKHEEKKLKR 240 VQIKEPACVR ASKMKESREK ARARARERTS NKISNIRGVQ EVELKKKYEN NLQAFQQDHH 300 SEGPRNDFNV IEESIVIKRK LKPSMMVSHH HHHPHYHQSH VIPKESSTSF NNNGDFNFLP 360 NSSPNWDANN NGTSSTNRST FCAIASMNLS TGLQIFGKSW EECTNPRLH* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g017055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233561 | 0.0 | AC233561.5 Medicago truncatula clone mth2-181h10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451264.1 | 0.0 | transcription factor DICHOTOMA | ||||
TrEMBL | G7ZY44 | 0.0 | G7ZY44_MEDTR; TCP family transcription factor | ||||
STRING | AES84186 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-31 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g017055.1 |
Entrez Gene | 25495586 |
Publications ? help Back to Top | |||
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