PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g015350.1 | ||||||||
Common Name | MTR_6g015350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 334aa MW: 37706.1 Da PI: 6.8635 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.7 | 1.1e-30 | 47 | 173 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg... 88 g kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl+ ak +i+el+ ++ ++ +++ + +s +++ +++ Medtr6g015350.1 47 FGTKDRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNIAKDEIDELPPLQIPQGNFTlgypSFASTIFNDDVRQNNtsi 140 589*************************************************************555554443332111222222211111111 PP TCP 89 .....................kaaksaakskksq 101 + +++++++kk++ Medtr6g015350.1 141 wksnskqglgdivtnkenwmnR-SEEDKEKKKEN 173 1111122344444444444321.11111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-29 | 48 | 175 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.527 | 49 | 107 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MINIPKEAEF PLKQEVLPSN DSTTSSSTTS QWLKLKDPRI VRVSRAFGTK DRHSKVYTIK 60 GLRDRRVRLS IQTAIHLYDL QDRLGLNQPS KVVDWLLNIA KDEIDELPPL QIPQGNFTLG 120 YPSFASTIFN DDVRQNNTSI WKSNSKQGLG DIVTNKENWM NRSEEDKEKK KENDNRDCAQ 180 HVSPDSLLPH LVPDNVSNII ISRGANQPSF LGSLNTMPLG YQLEPSSSHV PQLSNFGFVN 240 QIKDIDGNNG MHVVPFPSSL CLSTQQYFPS HVGAVEMDPT QINYHYDQML SSSSQNDSFN 300 PTQQLMRVTP KFFHSLNNSE SYSSHKDQDF PSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g015350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451026.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | A0A072U6R0 | 0.0 | A0A072U6R0_MEDTR; Putative transcription factor TCP family | ||||
STRING | XP_004489468.1 | 1e-109 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 7e-42 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g015350.1 |
Entrez Gene | 25495356 |
Publications ? help Back to Top | |||
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