PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g012970.1
Common NameMTR_6g012970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 412aa    MW: 46735.5 Da    PI: 4.3753
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g012970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-193786255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Medtr6g012970.1 37 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 86
                     789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.83E-323693No hitNo description
SuperFamilySSF541713.99E-193794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-273793IPR001471AP2/ERF domain
PROSITE profilePS5103219.5593794IPR001471AP2/ERF domain
SMARTSM003802.0E-3537100IPR001471AP2/ERF domain
PfamPF008471.0E-133786IPR001471AP2/ERF domain
PRINTSPR003676.0E-83849IPR001471AP2/ERF domain
PRINTSPR003676.0E-86076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MARKRKVSEA VEEGSMVWDD MMKEAASLGG ARRVRKRFVG VRQRPSGRWV AEIKDTIQKI  60
RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSQSS TSPALSSKIT NLLLQRLKER  120
NMNNSCSSFS SSKYTSLLGS PEERREQQRA NDHDRQEMQQ QVDAYGEVSK DFSIDQFTDF  180
LNDHEDYSTS NNELINDTAQ FDYISSSFES CLTENNGCKE DEMNMESKSN NVTETSSGDS  240
NSEDGEEEVN NDVSVDVPDF RFLDDIAPTS YYSPFEIAEE MEEQMVENES FCDEPSMIRA  300
VMKRMKYERK FSASLYAFNG IPECLKLKLE SGNNNGRGIS DQLNNLKEAC NKNKLEKKKK  360
MVDEKNEENN QTSTEMESSC LSSNDGDLFL WNSLDLPPIC FVNLLENGSF N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g012970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1194120.0AC119412.16 Medicago truncatula chromosome 6 clone mth2-31d18, complete sequence.
GenBankAC1498040.0AC149804.11 Medicago truncatula chromosome 6 clone mth2-73h22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618556.20.0ethylene-responsive transcription factor RAP2-12
TrEMBLG7KLB10.0G7KLB1_MEDTR; AP2/ERF domain transcription factor
STRINGAES747740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-23related to AP2 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]