PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g012280.1 | ||||||||
Common Name | MTR_6g012280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 334aa MW: 36016.9 Da PI: 7.8387 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.5 | 2.8e-32 | 88 | 145 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNh a+lGgha+DGC+Efmps++++ ++a++kCaACgCHRnFHRre+ee Medtr6g012280.1 88 VVTYKECLKNHVATLGGHALDGCCEFMPSPTATsDDPASIKCAACGCHRNFHRREPEE 145 689***************************999788******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.9E-27 | 89 | 143 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.7E-28 | 90 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 91 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.766 | 91 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.02E-19 | 213 | 283 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-30 | 217 | 283 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-27 | 222 | 279 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MMEVITATAT TTNTNTNTTS NSTNTTTSLT TNLTKEQQPE SENPTRIHQP ILSNITKPLS 60 FSNGVLKRHH PNHHNNNNNN VNNLNNVVVT YKECLKNHVA TLGGHALDGC CEFMPSPTAT 120 SDDPASIKCA ACGCHRNFHR REPEEPISTV FEYQPHHRHH PPPPPLFQSR SPSSPSPPPI 180 SSYPSAPHML LALSGAGVGL SIPPENTAAP LNHLSSPMGT SRKRFRTKFT QEQKEKMHEF 240 ADKVGWKMQK RDEEMVNGFC NEVGVDRSVL KVWMHNNKNT LGRKLSLDHV NGNGDSAAVN 300 ASVDGGSGGG CENENNGSNV AACGTTNGSS SSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 221 | 280 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15677 | 0.0 | leaf| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g012280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139600 | 0.0 | AC139600.16 Medicago truncatula chromosome 6 clone mth2-20m4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618493.2 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 2e-71 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | G7KKI2 | 0.0 | G7KKI2_MEDTR; Putative transcription factor ZF-HD family | ||||
STRING | AES74711 | 1e-158 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 1e-62 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g012280.1 |
Entrez Gene | 11407679 |
Publications ? help Back to Top | |||
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