PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr6g011250.1 | ||||||||
Common Name | MTR_6g011250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 20980.7 Da PI: 4.7962 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.9 | 3e-37 | 10 | 108 | 2 | 99 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaCk++rrkC+kdC+lapyfp ++pk+f nvh lFG+sn++kllk++++++ r dam+s+++e+++ra+ Pv+G+vgvi+++ ++++ +el Medtr6g011250.1 10 CAACKYQRRKCPKDCPLAPYFPTDKPKRFDNVHNLFGVSNIVKLLKNIKDNDvRADAMDSIIFESDIRAEFPVHGCVGVIHQYLGLIRESTEEL 103 ************************************************99988**********************************9999999 PP DUF260 95 allke 99 +++++ Medtr6g011250.1 104 NRTQS 108 98875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.622 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-35 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MNIMKSNKVC AACKYQRRKC PKDCPLAPYF PTDKPKRFDN VHNLFGVSNI VKLLKNIKDN 60 DVRADAMDSI IFESDIRAEF PVHGCVGVIH QYLGLIREST EELNRTQSLL AICKMNNHSQ 120 QQNLHSSLPS TAPQETNIPS FALDDLDNEE LNDLDGGVDA GWDLEPDDFF KDIEEYKERM 180 CMNN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-23 | 10 | 89 | 12 | 90 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-23 | 10 | 89 | 12 | 90 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr6g011250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450914.2 | 1e-134 | LOB domain-containing protein 24 | ||||
Swissprot | Q9STS6 | 1e-32 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A072U5D5 | 1e-135 | A0A072U5D5_MEDTR; LOB domain protein | ||||
STRING | AES99850 | 5e-52 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-34 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr6g011250.1 |
Entrez Gene | 25495262 |
Publications ? help Back to Top | |||
---|---|---|---|
|