PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g011230.1 | ||||||||
Common Name | MTR_6g011230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22870.2 Da PI: 7.7354 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.6 | 3.1e-36 | 11 | 108 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++rrkC+kdC lapyfpa++p+ f n+h+lFG+sn++k+lk+++ee r+dam+s++ e+++ra+ Pv G++ vi+ + +++++ el Medtr6g011230.1 11 ACASCKFQRRKCSKDCLLAPYFPADKPQVFGNAHRLFGVSNISKILKQVKEEYRDDAMKSIIIESDMRAQFPVGGCLDVIMMYYGMIKNSELEL 104 7****************************************************************************************99999 PP DUF260 95 allk 98 +++k Medtr6g011230.1 105 NSVK 108 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.036 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-34 | 11 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNINRGDTSK ACASCKFQRR KCSKDCLLAP YFPADKPQVF GNAHRLFGVS NISKILKQVK 60 EEYRDDAMKS IIIESDMRAQ FPVGGCLDVI MMYYGMIKNS ELELNSVKFL LDHCKQNLEP 120 YLSIHHSSAP SSSTRVPNPY FDTKQHFETN SMDAARVTQL ISGVSNAMEE KSNLMVTQGL 180 CHCEELLDLN GSTKFDLREK EK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-24 | 12 | 106 | 12 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-24 | 12 | 106 | 12 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g011230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450912.1 | 1e-151 | LOB domain-containing protein 22 | ||||
Swissprot | Q9STS6 | 3e-31 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A072U5L7 | 1e-150 | A0A072U5L7_MEDTR; LOB domain protein | ||||
STRING | XP_004497769.1 | 5e-47 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-33 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g011230.1 |
Entrez Gene | 25495260 |
Publications ? help Back to Top | |||
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