PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g005650.1
Common NameMTR_6g005650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 297aa    MW: 32502 Da    PI: 9.7006
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g005650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.61.2e-07114138125
          G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                      k+r++ +peLH+rFv+a+++ GGs+
  Medtr6g005650.1 114 KQRRCSSPELHRRFVNALQKFGGSQ 138
                      799********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-4113138IPR009057Homeodomain-like
PfamPF050572.1E-18198292IPR007751Domain of unknown function DUF676, lipase-like
Gene3DG3DSA:3.40.50.18203.6E-8201235IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534745.68E-7211284IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18203.6E-8271288IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVKKTPAYKN KLRVLDVDGY DISEAVPFVG WGPKGGKQIQ SAAGTLTFNR NSMCGQPART  60
VGWRDPGFIH TSFLKELWPN MRCVKSLREG FGLKGSSSSS NRAVSSSSPP TVQKQRRCSS  120
PELHRRFVNA LQKFGGSQGD VFYVNWGEVL PGATAVVSTL GGFGSEEQMS KINGEANVVA  180
VNAAEEDIEL TSTLLHQIQK HKRYCAFNSS VQKISFIAHS LGGLIARYAI AKLYERDISK  240
ELSQGNVHCD SQISNQECHV RKYEGKIAGL EPINFITSTT PHLGCRGHKQ LILLDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zk4_A1e-271087140217DIPHOSPHONUCLEOTIDE PHOSPHATASE 1
3zk4_B1e-271087140217DIPHOSPHONUCLEOTIDE PHOSPHATASE 1
3zk4_C1e-271087140217DIPHOSPHONUCLEOTIDE PHOSPHATASE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.111990.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g005650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447600.0AC144760.29 Medicago truncatula chromosome 6 clone mth2-8p15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7KHK10.0G7KHK1_MEDTR; DUF676 family protein
STRINGAES744130.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.12e-07G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]