PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g005450.1 | ||||||||
Common Name | MTR_6g005450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 348aa MW: 40468.9 Da PI: 7.9852 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.6 | 3.4e-13 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ++i+ + r++++ R+ g++ K eELS+LCd++++vi+++++ Medtr6g005450.1 9 EFIQKEKSRKISLQTRKIGLMTKVEELSILCDVDACVILYAPN 51 57999999********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.792 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.3E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.01E-15 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-15 | 2 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-12 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGRGRVSVEF IQKEKSRKIS LQTRKIGLMT KVEELSILCD VDACVILYAP NFEGQGYDEP 60 ETWPKDTKEL QRILQRYYNT TIDRRLKTYN VQEYFKERMK KVEFEISKVR KEKFKMKYQT 120 WDESFNFLED EQLRLFASIL DFKLDACNLK MNMLKGDLRG KSIALETNKI DNLNSSPYLD 180 SNPSSYFNLP QNNMSQAHIY PPLMNINDKN PLGFWPLISG QSSQPSHMVS TAQSSQPSPM 240 VSSAQSFYHV ESYPCKQIDG NWTHHVDGNV TYHHPKIDMK KDEAENDKIL PPYYYNRNGM 300 IMQSYPIAMS TLPSQNLSNL SHEHLNNGSY DKDVLHTQMF NYMDGRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g005450.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146560 | 0.0 | AC146560.21 Medicago truncatula chromosome 6 clone mth2-12g6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618177.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | G7KHI3 | 0.0 | G7KHI3_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES74395 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-23 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g005450.1 |
Entrez Gene | 11433962 |
Publications ? help Back to Top | |||
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