PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g005440.1 | ||||||||
Common Name | MTR_6g005440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 316aa MW: 36992.4 Da PI: 9.6576 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.2 | 1.8e-17 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+ ++ r++t+ kR+ g++KKA+E S+LCd++v++i+++++ Medtr6g005440.1 11 IQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPN 51 788999********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.381 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.21E-20 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-20 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-17 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRGRISMEL IQKERSRKIT LQKRKDGLIK KAKEFSILCD VDVCLILYAP NLEGQGYIEP 60 ETWPKDKREV QRVLQKYYET TIDRRPKTYD VQEYFKERMK KVELEIYKVR KERLKMKYPT 120 WDESYNSFGN EQLRSFVRFL DSKLDACDQK MNMRKDESYK VNNLISSPYL TSNSGTNFNL 180 MHTNISQVKI YSPLMNICDK NPLGFWPIRL GQSSQHSLMV SSAQSSYYYP SKHIDANVTY 240 DSKISMKKKD EVKNDKNLPS YYYNGNAMIM QSYPIAMPTP PFQNLANLSH EYLLYGSYDI 300 DSIQAQLFNS KNGTK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g005440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146560 | 0.0 | AC146560.21 Medicago truncatula chromosome 6 clone mth2-12g6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618176.1 | 0.0 | agamous-like MADS-box protein AGL17 | ||||
TrEMBL | G7KHI2 | 0.0 | G7KHI2_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES74394 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 8e-27 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g005440.1 |
Entrez Gene | 11439437 |
Publications ? help Back to Top | |||
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