PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g005080.1

Common Name

MTR_6g005080

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 143aa MW: 15838.9 Da PI: 6.7742

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g005080.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.3	2.6e-43	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dC++apyfp e+p+kf nvhk+FGasnv+k+l+++ +++red+++sl+yeAear+++PvyG+vg i+ lq ql +l++el Medtr6g005080.1 10 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFVNVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKNPVYGCVGAISVLQGQLFRLQKEL 103 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Medtr6g005080.1 104 DATNA 108 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.437	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-42	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MMASGYSNSP CAACKFLRRK CNQDCIFAPY FPPEEPHKFV NVHKIFGASN VSKILNEVLP 60 HQREDTVNSL AYEAEARIKN PVYGCVGAIS VLQGQLFRLQ KELDATNADL IRFTHEGSSS 120 LGLGHVHSDD FFNYPSNLSN DM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-58	7	114	8	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-58	7	114	8	115	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g005080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174342	0.0	AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003618148.3	1e-104	LOB domain-containing protein 25
Swissprot	Q8L8Q3	1e-64	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A396HAP9	1e-104	A0A396HAP9_MEDTR; Putative transcription factor AS2-LOB family
STRING	AES74366	1e-102	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-67	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Medtr6g005080.1
Entrez Gene	11421075

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]