PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g005070.3 | ||||||||
Common Name | MTR_6g005070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 15925.9 Da PI: 7.0702 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.3e-44 | 9 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+ql +l++el Medtr6g005070.3 9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQLLKLQKEL 102 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Medtr6g005070.3 103 DATNA 107 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.626 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-43 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MASSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKIFGASNV SKILNEVLPH 60 QREDTVNSLA YEAEARIKDP VYGCVGAISV LQRQLLKLQK ELDATNADLI RLNHQGSSSL 120 GLGHVHSDGF FNCPSNLSND SCGDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-59 | 6 | 111 | 8 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-59 | 6 | 111 | 8 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g005070.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174342 | 0.0 | AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618147.1 | 1e-105 | LOB domain-containing protein 25 | ||||
Refseq | XP_024641260.1 | 1e-105 | LOB domain-containing protein 25 | ||||
Refseq | XP_024641261.1 | 1e-105 | LOB domain-containing protein 25 | ||||
Refseq | XP_024641262.1 | 1e-105 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 7e-67 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | G7KQ00 | 1e-103 | G7KQ00_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES74365 | 1e-104 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-59 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g005070.3 |
Entrez Gene | 11423777 |
Publications ? help Back to Top | |||
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