PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g004550.1 | ||||||||
Common Name | MTR_6g004550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 16768.9 Da PI: 5.8042 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 57.2 | 4.8e-18 | 3 | 72 | 31 | 99 |
DUF260 31 anvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 an+h+lFG sn++k+lk++ +++++++am+s+++e+e+rar P +G++g+i+++q + ++ +el+++k+ Medtr6g004550.1 3 ANAHRLFGISNMVKTLKSIdDDHHKDEAMKSIIFESEMRARYPSHGCLGLIMEYQDMIIESMKELDHVKQ 72 79*****************445559*************************************9*999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.913 | 1 | 74 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-16 | 3 | 71 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MLANAHRLFG ISNMVKTLKS IDDDHHKDEA MKSIIFESEM RARYPSHGCL GLIMEYQDMI 60 IESMKELDHV KQLLNLCKLS HQQNLRHFSS SDHSSVPSTS SSIPIFNNVG DFPYYDRNSE 120 NNNDTQVLGN LDMIKYEEEL DYVKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g004550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450910.1 | 5e-32 | LOB domain-containing protein 27 | ||||
TrEMBL | A0A072UG64 | 1e-103 | A0A072UG64_MEDTR; LOB domain protein | ||||
STRING | AES99850 | 7e-33 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-16 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g004550.1 |
Entrez Gene | 25495120 |
Publications ? help Back to Top | |||
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