PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g004250.1

Common Name

MTR_6g004250

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

MYB_related

Protein Properties

Length: 80aa MW: 9011.05 Da PI: 6.799

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g004250.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.2	5.7e-11	9	56	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +W e+ + + +a + + ++ +W Ia+ +g g+t++q+ks++q +l Medtr6g004250.1 9 AWNVEDNKAFERALAVYDKDtpeRWYNIAKVVG-GKTPEQVKSHYQLLL 56 7******************************.**********875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.301	5	60	IPR017884	SANT domain
SMART	SM00717	1.2E-9	6	58	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.47E-13	8	64	IPR009057	Homeodomain-like
Pfam	PF00249	9.9E-9	9	55	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-9	9	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-5	30	57	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MSYSSSSTAW NVEDNKAFER ALAVYDKDTP ERWYNIAKVV GGKTPEQVKS HYQLLLQDIH 60 LIESGQVPFP SYTNPKHPT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-30	2	72	3	73	RADIALIS
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expressed at stage two (plastochrons 7 and 8), when the floral meristem comprised a loaf-shaped bulge of cells. Expression was in the dorsal region of the floral meristem. At stage four, when sepal primordia had emerged around the meristem dome, expression could be seen in the dorsal sepal primordium. At stage five, expressed in emerging dorsal primordia of whorls two and three. In older flower buds (stages seven and eight), expression was found mainly in the dorsal petals and staminode. {ECO:0000269\|PubMed:15790677}.
Uniprot	TISSUE SPECIFICITY: Specifically expressed in the dorsal region of developing flowers. {ECO:0000269\|PubMed:15790677}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g004250.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027358746.1	1e-37	transcription factor RADIALIS-like
Swissprot	Q58FS3	6e-30	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A072UG34	1e-52	A0A072UG34_MEDTR; Putative transcription factor MYB/SANT family
STRING	XP_004489311.1	9e-35	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF154	34	280

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	8e-31	RAD-like 1

Link Out ? help Back to Top
Phytozome	Medtr6g004250.1
Entrez Gene	25495098

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]