PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g488170.1 | ||||||||
Common Name | MTR_5g488170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 28148 Da PI: 8.44 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ +v+++G+++W+ +++ g+ R++k+c++rw+++l Medtr5g488170.1 14 KGTWSKEEDEILKAYVEKHGTRNWNEVSKNAGLIRCGKSCRLRWYNHL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.7 | 4.2e-11 | 67 | 110 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g++++eE + + ++G W++ a++++ gR+++++k++w+ Medtr5g488170.1 67 KGPFSEEEKSKVFEFYIKYGEFKWSKLAHELP-GRSDNDIKNFWN 110 79******************99**********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.938 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-13 | 16 | 61 | No hit | No description |
SMART | SM00717 | 6.1E-12 | 66 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.639 | 66 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-9 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.31E-10 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSSSSSSST DTKKGTWSKE EDEILKAYVE KHGTRNWNEV SKNAGLIRCG KSCRLRWYNH 60 LQPDVKKGPF SEEEKSKVFE FYIKYGEFKW SKLAHELPGR SDNDIKNFWN ARKRKLEKLG 120 LSPFPDNMEP DHKLNSSQQV EDSQEDEFNI PQLKFRKYPS IFDEINEKLL DVPNMFYNNV 180 GSTSTLIDRV SSIIGTSHIH IPIALPSPCS YLPLPSPMML DEKGKKPISL EDRSLKQTLM 240 ISWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 11 | 117 | 4 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g488170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124972 | 1e-159 | AC124972.41 Medicago truncatula clone mth2-24j4, complete sequence. | |||
GenBank | AC130803 | 1e-159 | AC130803.61 Medicago truncatula clone mth2-10g3, complete sequence. | |||
GenBank | CR954185 | 1e-159 | CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013454317.1 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | A0A072UGX1 | 1e-179 | A0A072UGX1_MEDTR; Myb DNA-binding domain protein | ||||
STRING | AET00077 | 1e-171 | (Medicago truncatula) | ||||
STRING | AET00084 | 1e-171 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15637 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26960.1 | 4e-40 | myb domain protein 81 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g488170.1 |
Entrez Gene | 25495063 |
Publications ? help Back to Top | |||
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