PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g099060.1 | ||||||||
Common Name | MTR_5g099060, NIN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Nin-like | ||||||||
Protein Properties | Length: 934aa MW: 102683 Da PI: 6.5029 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.1 | 1.7e-28 | 613 | 664 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Medtr5g099060.1 613 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 664 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.37 | 603 | 684 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.5E-24 | 617 | 664 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.05E-23 | 820 | 916 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 6.1E-24 | 830 | 911 | No hit | No description |
PROSITE profile | PS51745 | 21.099 | 831 | 914 | IPR000270 | PB1 domain |
SMART | SM00666 | 8.7E-26 | 831 | 914 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.8E-14 | 832 | 913 | IPR000270 | PB1 domain |
CDD | cd06407 | 5.57E-38 | 832 | 913 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 934 aa Download sequence Send to blast |
MEYGGGLVAD GGVFGPMVGG GGGDQADIIE ELLGEGCWIE ASENSLMAMQ QTTPQSQYMS 60 NNNNIPMGMG EGDHFNHHHH HHPHPHHQME CTAPAANHDD QQESGFVVGK RWWIGPRANP 120 GPTTSVKERL VVAVGYLKEY TKNSSNNVLI QIWVPMRRRS ALIHTQNHYL QQESSSAPVS 180 VNPNMNVHVR FFRSHDYPRH QQQQQYGSLL ALPVFERGSG TCLGVIEFVI SNQTLINYRP 240 QLDHLSNALE AVDFRSSHNM NIPQAVKVFE ELYEAAVNEI MEVLASVCKT HNLPLALTWA 300 PCLQQQQGGG KGSSGASGCG VSTMSCCIST VDSACYVGDM DVLGFQEACS EYHLFNGQGI 360 VGTAFTTTKP CFAIDITAFS KSEYPLAHHA NMFGLHAAVA IPLRSVYTGS AADFVLEFFL 420 PKDCRDTEQQ KQMLNSLSLV VQQACRSLHL HVVMDDNNNN NMNDNNSSAD HDHDQFTFPT 480 TNSYMPSSAS EPLSQVDAVS GCSTKDTSSS CSWIAHMMEA QNKGKGVSVS LEYLQEPKEE 540 FKVTTCNWDR EREDNVFSEF GQVLQQQQHD QSSNSRASVV SVEAGEESPG ACGRRSSSSS 600 SGRKSGDKRR TKAEKTISLP VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK 660 IKKVGHSLKK LQLVIDSVQG AEGAIQIGSF YASFPELSNA TANGGDGNDN SNNSFYNNNH 720 GDGIVTSLKS PPSACSQTHA GNKLPMTTTT AINHHHVVMT ENPTGAPLGV DHAFMHASNI 780 NIQDYHQLQE DLDTKQLLLH FNNNNQILPP RPTVAWNNNN SSSSTLLERG AFRVKATFAD 840 EKIRFSLQAM WGFRDLQLEI ARRFNLTDMN NLVLKYLDDE GEWVVLSCDA DLEECKDLHT 900 SSHTRTIRLS LFQASPLNLP NTFRNSSSSS PSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.20542 | 0.0 | root |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g099060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ719774 | 0.0 | FJ719774.1 Medicago truncatula nodule inception protein (NIN) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618108.1 | 0.0 | protein NLP5 | ||||
TrEMBL | C0LLV9 | 0.0 | C0LLV9_MEDTR; Nodule inception protein | ||||
STRING | AET01067 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1237 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 1e-158 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g099060.1 |
Entrez Gene | 11421786 |
Publications ? help Back to Top | |||
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