PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g099060.1
Common NameMTR_5g099060, NIN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Nin-like
Protein Properties Length: 934aa    MW: 102683 Da    PI: 6.5029
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g099060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.11.7e-28613664152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Medtr5g099060.1 613 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 664
                      589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.37603684IPR003035RWP-RK domain
PfamPF020424.5E-24617664IPR003035RWP-RK domain
SuperFamilySSF542771.05E-23820916No hitNo description
Gene3DG3DSA:3.10.20.2406.1E-24830911No hitNo description
PROSITE profilePS5174521.099831914IPR000270PB1 domain
SMARTSM006668.7E-26831914IPR000270PB1 domain
PfamPF005643.8E-14832913IPR000270PB1 domain
CDDcd064075.57E-38832913No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MEYGGGLVAD GGVFGPMVGG GGGDQADIIE ELLGEGCWIE ASENSLMAMQ QTTPQSQYMS  60
NNNNIPMGMG EGDHFNHHHH HHPHPHHQME CTAPAANHDD QQESGFVVGK RWWIGPRANP  120
GPTTSVKERL VVAVGYLKEY TKNSSNNVLI QIWVPMRRRS ALIHTQNHYL QQESSSAPVS  180
VNPNMNVHVR FFRSHDYPRH QQQQQYGSLL ALPVFERGSG TCLGVIEFVI SNQTLINYRP  240
QLDHLSNALE AVDFRSSHNM NIPQAVKVFE ELYEAAVNEI MEVLASVCKT HNLPLALTWA  300
PCLQQQQGGG KGSSGASGCG VSTMSCCIST VDSACYVGDM DVLGFQEACS EYHLFNGQGI  360
VGTAFTTTKP CFAIDITAFS KSEYPLAHHA NMFGLHAAVA IPLRSVYTGS AADFVLEFFL  420
PKDCRDTEQQ KQMLNSLSLV VQQACRSLHL HVVMDDNNNN NMNDNNSSAD HDHDQFTFPT  480
TNSYMPSSAS EPLSQVDAVS GCSTKDTSSS CSWIAHMMEA QNKGKGVSVS LEYLQEPKEE  540
FKVTTCNWDR EREDNVFSEF GQVLQQQQHD QSSNSRASVV SVEAGEESPG ACGRRSSSSS  600
SGRKSGDKRR TKAEKTISLP VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK  660
IKKVGHSLKK LQLVIDSVQG AEGAIQIGSF YASFPELSNA TANGGDGNDN SNNSFYNNNH  720
GDGIVTSLKS PPSACSQTHA GNKLPMTTTT AINHHHVVMT ENPTGAPLGV DHAFMHASNI  780
NIQDYHQLQE DLDTKQLLLH FNNNNQILPP RPTVAWNNNN SSSSTLLERG AFRVKATFAD  840
EKIRFSLQAM WGFRDLQLEI ARRFNLTDMN NLVLKYLDDE GEWVVLSCDA DLEECKDLHT  900
SSHTRTIRLS LFQASPLNLP NTFRNSSSSS PSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.205420.0root
Function -- GeneRIF ? help Back to Top
  1. interacts with NLPs to mediate nitrate inhibition of nodulation
    [PMID: 30297831]
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g099060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7197740.0FJ719774.1 Medicago truncatula nodule inception protein (NIN) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618108.10.0protein NLP5
TrEMBLC0LLV90.0C0LLV9_MEDTR; Nodule inception protein
STRINGAET010670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.11e-158Nin-like family protein
Publications ? help Back to Top
  1. Hirsch S, et al.
    GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula.
    Plant Cell, 2009. 21(2): p. 545-57
    [PMID:19252081]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Lin JS, et al.
    NIN interacts with NLPs to mediate nitrate inhibition of nodulation in Medicago truncatula.
    Nat Plants, 2018. 4(11): p. 942-952
    [PMID:30297831]