PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g097500.1
Common NameMTR_5g097500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 312aa    MW: 35517 Da    PI: 9.318
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g097500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.63.4e-2083139259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+W+KYG K++k++e+ r+YY+Ct+++C++kkk   s+ d++v    Y++ Hnh+
  Medtr5g097500.1  83 KDGYKWKKYGEKNIKKNEHKRAYYKCTHSDCQAKKKFHWSN-DGTVEYFSYTNPHNHP 139
                      7**************************************99.***************8 PP
2WRKY77.31.7e-24229287159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ++D y+WrKYG+K+v+g++  r+Y+rC+++gC+vkk ve+s  + + v++tY+g+H+he
  Medtr5g097500.1 229 VNDAYRWRKYGRKMVNGKTIQRNYFRCAYPGCTVKKYVEKSPLNATNVTTTYKGQHDHE 287
                      58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-1973141IPR003657WRKY domain
PROSITE profilePS5081117.94777141IPR003657WRKY domain
SuperFamilySSF1182901.7E-1877141IPR003657WRKY domain
SMARTSM007741.6E-1682140IPR003657WRKY domain
PfamPF031063.9E-1683139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-25215289IPR003657WRKY domain
SuperFamilySSF1182909.94E-22223289IPR003657WRKY domain
PROSITE profilePS5081123.927224289IPR003657WRKY domain
SMARTSM007741.9E-24229288IPR003657WRKY domain
PfamPF031063.6E-18230286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVLSQQNVDH NDSPSEVQHR VNHQREIILS RETNDVAMAC ELVLSHSSPL MQHSQSPNTP  60
SRELPLIQSN QYTRSIIREM VRKDGYKWKK YGEKNIKKNE HKRAYYKCTH SDCQAKKKFH  120
WSNDGTVEYF SYTNPHNHPN PQSSIVPPID HVLPIVEHGP HLPYLAGVEV QGDKYSLFAS  180
ILVSILHEKP LNILYIVVHA DNNTNATRAS VLTGEPHLVV QTSSANEVVN DAYRWRKYGR  240
KMVNGKTIQR NYFRCAYPGC TVKKYVEKSP LNATNVTTTY KGQHDHEPPT GRGVRHDSDT  300
NTQIMCINGK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21218291376WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g097500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1608400.0AC160840.31 Medicago truncatula clone mth2-27o21, complete sequence.
GenBankCR9550060.0CR955006.2 Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640831.11e-158probable WRKY transcription factor 20
TrEMBLG7KEQ20.0G7KEQ2_MEDTR; Putative transcription factor WRKY family
STRINGAET009270.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.26e-43zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]