PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g097490.2 | ||||||||
Common Name | MTR_5g097490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 392aa MW: 43456.8 Da PI: 6.4417 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81.4 | 9.3e-26 | 92 | 149 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+vkgsef rsYY+Ct+++Cp++k+ + s+ d+++ + Y g+Hnh+k Medtr5g097490.2 92 KDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQFQLSH-DGNYEDCSYIGQHNHPK 149 7***************************************9.***************85 PP | |||||||
2 | WRKY | 101.2 | 6.3e-32 | 251 | 309 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+vkg+++pr+YYrC+s+gCpvkk+ve+s++++++v++tYeg+H+h Medtr5g097490.2 251 VNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHA 309 58********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.126 | 86 | 150 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-23 | 87 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-22 | 88 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-26 | 91 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-21 | 92 | 148 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.1E-34 | 237 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 243 | 311 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.399 | 246 | 311 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-36 | 251 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-24 | 252 | 308 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MVLSQESADH NVSSDKVQQQ VSPQREIALS QGIDDVAKNE VSDSDAMACD LVSSYSSPPE 60 QHSQSPKTPS HELPPMQSGQ DRPSIIRDKV TKDGYKWRKY GQKNVKGSEF KRSYYKCTYS 120 DCPARKQFQL SHDGNYEDCS YIGQHNHPKP ESNTVPPDTV SPVDRVLPVV EKGPPQSSFA 180 DVEGQENSSV EYESMPRQVT PLRFHPPSKV SRTDESKRLK KDNSNTDATG ADVLTGESRV 240 IVRTTSESGI VNDGYRWRKY GQKMVKGNTN PRNYYRCSSP GCPVKKHVEK SSQNTTTVIT 300 TYEGQHDHAP PTGRGVLDNT AVKLTPIRAT ILPNQSLESE LNEEEQRNED PSTKEDSISD 360 AMIRDSSLKV PCRLSEHDTP STTSVAEPAQ S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-31 | 90 | 313 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.3397 | 0.0 | flower| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g097490.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160840 | 0.0 | AC160840.31 Medicago truncatula clone mth2-27o21, complete sequence. | |||
GenBank | CR955006 | 0.0 | CR955006.2 Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003617967.1 | 0.0 | WRKY transcription factor SUSIBA2 | ||||
Refseq | XP_024640264.1 | 0.0 | WRKY transcription factor SUSIBA2 | ||||
Refseq | XP_024640265.1 | 0.0 | WRKY transcription factor SUSIBA2 | ||||
Swissprot | Q9SI37 | 5e-64 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | G7KEQ1 | 0.0 | G7KEQ1_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AET00926 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.1 | 4e-66 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g097490.2 |
Entrez Gene | 11423747 |
Publications ? help Back to Top | |||
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