PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g097490.1
Common NameMTR_5g097490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 392aa    MW: 43456.8 Da    PI: 6.4417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g097490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.49.3e-2692149260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYGqK+vkgsef rsYY+Ct+++Cp++k+ + s+ d+++ +  Y g+Hnh+k
  Medtr5g097490.1  92 KDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQFQLSH-DGNYEDCSYIGQHNHPK 149
                      7***************************************9.***************85 PP
2WRKY101.26.3e-32251309159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+vkg+++pr+YYrC+s+gCpvkk+ve+s++++++v++tYeg+H+h 
  Medtr5g097490.1 251 VNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHA 309
                      58********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.12686150IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-2387150IPR003657WRKY domain
SuperFamilySSF1182902.35E-2288150IPR003657WRKY domain
SMARTSM007741.6E-2691149IPR003657WRKY domain
PfamPF031064.6E-2192148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-34237311IPR003657WRKY domain
SuperFamilySSF1182901.83E-27243311IPR003657WRKY domain
PROSITE profilePS5081131.399246311IPR003657WRKY domain
SMARTSM007747.3E-36251310IPR003657WRKY domain
PfamPF031063.8E-24252308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVLSQESADH NVSSDKVQQQ VSPQREIALS QGIDDVAKNE VSDSDAMACD LVSSYSSPPE  60
QHSQSPKTPS HELPPMQSGQ DRPSIIRDKV TKDGYKWRKY GQKNVKGSEF KRSYYKCTYS  120
DCPARKQFQL SHDGNYEDCS YIGQHNHPKP ESNTVPPDTV SPVDRVLPVV EKGPPQSSFA  180
DVEGQENSSV EYESMPRQVT PLRFHPPSKV SRTDESKRLK KDNSNTDATG ADVLTGESRV  240
IVRTTSESGI VNDGYRWRKY GQKMVKGNTN PRNYYRCSSP GCPVKKHVEK SSQNTTTVIT  300
TYEGQHDHAP PTGRGVLDNT AVKLTPIRAT ILPNQSLESE LNEEEQRNED PSTKEDSISD  360
AMIRDSSLKV PCRLSEHDTP STTSVAEPAQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-3190313176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.33970.0flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g097490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1608400.0AC160840.31 Medicago truncatula clone mth2-27o21, complete sequence.
GenBankCR9550060.0CR955006.2 Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617967.10.0WRKY transcription factor SUSIBA2
RefseqXP_024640264.10.0WRKY transcription factor SUSIBA2
RefseqXP_024640265.10.0WRKY transcription factor SUSIBA2
SwissprotQ9SI375e-64WRKY1_ARATH; WRKY transcription factor 1
TrEMBLG7KEQ10.0G7KEQ1_MEDTR; Putative transcription factor WRKY family
STRINGAET009260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.14e-66zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]