PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g097480.1
Common NameMTR_5g097480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 545aa    MW: 61007 Da    PI: 6.3651
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g097480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.41.8e-1391745441374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++ L++cA+a++++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl+ s+s++yk+l+++e +   s+e l+++++++ev+P++kf+
  Medtr5g097480.1 174 LKHILTACAKAIADNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSASGSSIYKSLRCKEPE---SAELLSYMNILYEVCPYFKFG 264
                      6899*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea+++e rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++p+s   +   l+ +++rL+k+A++++vpfef++ +a + 
  Medtr5g097480.1 265 YMSANGAIAEAMKNEARVHIIDFQIAQGSQWISLIQAFAARPGGPPHIRITGIDDPTSAyaRGGGLHIVEKRLSKLARHFKVPFEFHA-AAISG 357
                      *********************************************************9999999************************.88899 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d++l++L+v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+++yy+a+f+s++++lpre++
  Medtr5g097480.1 358 CDVQLHNLAVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHK 451
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr++e++g+l+lgW++r Lv+ +aW+
  Medtr5g097480.1 452 ERINVEQHCLARDLVNIIACEGVERVERHELLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDR-YRLQERDGALYLGWMNRDLVASCAWK 544
                      *****************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.316148525IPR005202Transcription factor GRAS
PfamPF035146.3E-137174544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQASEQHRSS SMYYQPLQQI EAYCLPQYRN LNHQLYNNDG GQATQFSAPT SSDLYYCTLE  60
SSSAAGSFAV YNSPSTVSFS PNDSPMSQQE SQSYPSDKYH SPDNTYGSPM SGSCITEDLS  120
SFKHKLRELE SVMLGPDSDN LDSYDSAISN GTNFASLEMD SWRQTMVAIS SKNLKHILTA  180
CAKAIADNDL LMAQWLMDEL RQMVSVSGEP IQRLGAYMLE GLVARLSASG SSIYKSLRCK  240
EPESAELLSY MNILYEVCPY FKFGYMSANG AIAEAMKNEA RVHIIDFQIA QGSQWISLIQ  300
AFAARPGGPP HIRITGIDDP TSAYARGGGL HIVEKRLSKL ARHFKVPFEF HAAAISGCDV  360
QLHNLAVRPG EALAVNFAFM LHHMPDESVS TQNHRDRLLR LVKSLSPKVV TLVEQESNTN  420
TAAFFPRFLE TMDYYTAMFE SIDVTLPREH KERINVEQHC LARDLVNIIA CEGVERVERH  480
ELLGKWRSRF AMAGFTPYPL SSLVNGTIKK LLENYSDRYR LQERDGALYL GWMNRDLVAS  540
CAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-601785448375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.121660.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g097480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9550060.0CR955006.2 Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617966.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLG7KEQ00.0G7KEQ0_MEDTR; GRAS family transcription factor
STRINGAET009250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]