PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g096610.1 | ||||||||
Common Name | MTR_5g096610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 123aa MW: 14174 Da PI: 6.2552 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.3e-12 | 71 | 112 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 g+WT eEd ll + ++G + Wk+Iar++ +R++ qc+sr+ Medtr5g096610.1 71 GAWTREEDNLLFLGLVLYGHK-WKRIARELVITRSASQCRSRF 112 79*******************.*********99*********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3 | 5 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.99E-5 | 6 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 3.95 | 7 | 57 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 12.116 | 65 | 120 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-10 | 68 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-9 | 69 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-11 | 71 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-12 | 71 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-9 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MAGQGGGNWT GEDTLRLREA MQQFPPHTNN RYLMILQAFP EERRQDIAIL EHYLEELAGE 60 EQQFLPPQNF GAWTREEDNL LFLGLVLYGH KWKRIARELV ITRSASQCRS RFGTQAFAGF 120 NF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g096610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT963107 | 1e-129 | CT963107.2 Medicago truncatula chromosome 5 clone mte1-34b22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7K4S9 | 3e-85 | G7K4S9_MEDTR; Myb transcription factor | ||||
STRING | AET00849 | 6e-86 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 4e-07 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g096610.1 |
Entrez Gene | 11428892 |
Publications ? help Back to Top | |||
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