PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g096500.3
Common NameMTR_5g096500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 887aa    MW: 96743.7 Da    PI: 5.7599
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g096500.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07500524126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +k + Cr++++ G C+ Gd+C+F+H+
  Medtr5g096500.3 500 PKPKQCRHYMK-GRCHEGDQCNFSHD 524
                      58889******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-5496524IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037499525IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957499526IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6500524IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-5500524IPR000571Zinc finger, CCCH-type
SMARTSM003560.064528554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258528555IPR000571Zinc finger, CCCH-type
SMARTSM003567.3556579IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.099558580IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MEKVDTEIIP MPFPPYRRSH FRSHTYTTLL RILSHLSSST VPDNGNVGMG QENQEKEPEN  60
SELKVGADVK DPKGPIPLKE IHDVHETIES VGDKGKDLSA NAMVLDDAAA FLMGGDEQST  120
QTDGFHLEQT IMDELELVVK GDEDPVCDDS LIPLNCEKQN SGSEVDLMDY RVEHVEHLRS  180
GTNTSESVSE VQSQVQGELN QLDVEGFNVS ESTKGQASDS VISSTSSIQI ERQQKETELV  240
TLVCPLAGSI PTIQEGEFEK EEQYGHKVDE ATHSSLDLDT NTEALNMTED GGLLDSTILK  300
DKCETQNEEK SEKLICVKNT TNSSDILIDE GDLEEGEISG EISMDGNTFD VSSADAIVSE  360
QMKLDEIEKP GSSFENMTSP FNTGISFQGF PSNLFTVNAI QDTPTLTKNQ VLRKGFMEET  420
SHGNSSVVQQ IVDASRNEQS GPDPKKKKNK KQMVDASGSK RGPGSQEKKT RKRKKYRKNK  480
AEKNREPGGK RPKFIPEQKP KPKQCRHYMK GRCHEGDQCN FSHDAIPLTK SVPCAHYACG  540
SCMKGNDCPY DHQLSKYPCS NFVSKGSCYR GRCMFSHQVQ TSQDIPTPTN ACKPELKSPL  600
SSGNTNFSTP LNNHGTGSVQ QTNSNSKGIY SHTNVEHKVT DVSQTKPTSA PKGIRFINVA  660
NLSPTTPKQD TVQPNKGNLV HGGTCADKGQ NTVEISKKIP AVMPKGVNFL SFGKGSVCSF  720
KLSIQSTAQE MILKLPQSVN FGLSEHSVSL LNKDDHGKAI DITAQNLPQT ALFSHEISDK  780
NQSMAERMKS RFLEKDSTDD SVRDHSHCKS AQEVNKASDN SQASTVTSAT LLASPFVSLQ  840
SSEGLVSGCP KQASNIGQRA LISTLAFAAE HESNIKMKCP TGASPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470474RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.71730.0flower| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g096500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5730780.0CT573078.1 Medicago truncatula chromosome 5 clone mte1-4f8, COMPLETE SEQUENCE.
GenBankCT9631070.0CT963107.2 Medicago truncatula chromosome 5 clone mte1-34b22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617880.20.0uncharacterized protein LOC11437410 isoform X1
RefseqXP_024640327.10.0uncharacterized protein LOC11437410 isoform X1
RefseqXP_024640328.10.0uncharacterized protein LOC11437410 isoform X1
RefseqXP_024640329.10.0uncharacterized protein LOC11437410 isoform X1
TrEMBLG7K4R90.0G7K4R9_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRINGAET008390.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]