PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g096500.3 | ||||||||
Common Name | MTR_5g096500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 887aa MW: 96743.7 Da PI: 5.7599 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.7e-07 | 500 | 524 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k + Cr++++ G C+ Gd+C+F+H+ Medtr5g096500.3 500 PKPKQCRHYMK-GRCHEGDQCNFSHD 524 58889******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 496 | 524 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0037 | 499 | 525 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.957 | 499 | 526 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 500 | 524 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-5 | 500 | 524 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.064 | 528 | 554 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 528 | 555 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3 | 556 | 579 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.099 | 558 | 580 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 887 aa Download sequence Send to blast |
MEKVDTEIIP MPFPPYRRSH FRSHTYTTLL RILSHLSSST VPDNGNVGMG QENQEKEPEN 60 SELKVGADVK DPKGPIPLKE IHDVHETIES VGDKGKDLSA NAMVLDDAAA FLMGGDEQST 120 QTDGFHLEQT IMDELELVVK GDEDPVCDDS LIPLNCEKQN SGSEVDLMDY RVEHVEHLRS 180 GTNTSESVSE VQSQVQGELN QLDVEGFNVS ESTKGQASDS VISSTSSIQI ERQQKETELV 240 TLVCPLAGSI PTIQEGEFEK EEQYGHKVDE ATHSSLDLDT NTEALNMTED GGLLDSTILK 300 DKCETQNEEK SEKLICVKNT TNSSDILIDE GDLEEGEISG EISMDGNTFD VSSADAIVSE 360 QMKLDEIEKP GSSFENMTSP FNTGISFQGF PSNLFTVNAI QDTPTLTKNQ VLRKGFMEET 420 SHGNSSVVQQ IVDASRNEQS GPDPKKKKNK KQMVDASGSK RGPGSQEKKT RKRKKYRKNK 480 AEKNREPGGK RPKFIPEQKP KPKQCRHYMK GRCHEGDQCN FSHDAIPLTK SVPCAHYACG 540 SCMKGNDCPY DHQLSKYPCS NFVSKGSCYR GRCMFSHQVQ TSQDIPTPTN ACKPELKSPL 600 SSGNTNFSTP LNNHGTGSVQ QTNSNSKGIY SHTNVEHKVT DVSQTKPTSA PKGIRFINVA 660 NLSPTTPKQD TVQPNKGNLV HGGTCADKGQ NTVEISKKIP AVMPKGVNFL SFGKGSVCSF 720 KLSIQSTAQE MILKLPQSVN FGLSEHSVSL LNKDDHGKAI DITAQNLPQT ALFSHEISDK 780 NQSMAERMKS RFLEKDSTDD SVRDHSHCKS AQEVNKASDN SQASTVTSAT LLASPFVSLQ 840 SSEGLVSGCP KQASNIGQRA LISTLAFAAE HESNIKMKCP TGASPV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 470 | 474 | RKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7173 | 0.0 | flower| leaf| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g096500.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT573078 | 0.0 | CT573078.1 Medicago truncatula chromosome 5 clone mte1-4f8, COMPLETE SEQUENCE. | |||
GenBank | CT963107 | 0.0 | CT963107.2 Medicago truncatula chromosome 5 clone mte1-34b22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003617880.2 | 0.0 | uncharacterized protein LOC11437410 isoform X1 | ||||
Refseq | XP_024640327.1 | 0.0 | uncharacterized protein LOC11437410 isoform X1 | ||||
Refseq | XP_024640328.1 | 0.0 | uncharacterized protein LOC11437410 isoform X1 | ||||
Refseq | XP_024640329.1 | 0.0 | uncharacterized protein LOC11437410 isoform X1 | ||||
TrEMBL | G7K4R9 | 0.0 | G7K4R9_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein | ||||
STRING | AET00839 | 0.0 | (Medicago truncatula) |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g096500.3 |
Entrez Gene | 11437410 |
Publications ? help Back to Top | |||
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