PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g096500.2
Common NameMTR_5g096500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 886aa    MW: 96615.6 Da    PI: 5.7599
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g096500.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07499523126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +k + Cr++++ G C+ Gd+C+F+H+
  Medtr5g096500.2 499 PKPKQCRHYMK-GRCHEGDQCNFSHD 523
                      58889******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-5495523IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037498524IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957498525IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6499523IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-5499523IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258527554IPR000571Zinc finger, CCCH-type
SMARTSM003560.064527553IPR000571Zinc finger, CCCH-type
SMARTSM003567.3555578IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.099557579IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MEKVDTEIIP MPFPPYRRSH FRSHTYTTLL RILSHLSSST VPDNGNVGMG QENQEKEPEN  60
SELKVGADVK DPKGPIPLKE IHDVHETIES VGDKGKDLSA NAMVLDDAAA FLMGGDEQST  120
QTDGFHLEQT IMDELELVVK GDEDPVCDDS LIPLNCEKQN SGSEVDLMDY RVEHVEHLRS  180
GTNTSESVSE VQSQVQGELN QLDVEGFNVS ESTKGQASDS VISSTSSIQI ERQQKETELV  240
TLVCPLAGSI PTIQEGEFEK EEQYGHKVDE ATHSSLDLDT NTEALNMTED GGLLDSTILK  300
DKCETQNEEK SEKLICVKNT TNSSDILIDE GDLEEGEISG EISMDGNTFD VSSADAIVSE  360
QMKLDEIEKP GSSFENMTSP FNTGISFQGF PSNLFTVNAI QDTPTLTKNQ VLRKGFMEET  420
SHGNSSVVQI VDASRNEQSG PDPKKKKNKK QMVDASGSKR GPGSQEKKTR KRKKYRKNKA  480
EKNREPGGKR PKFIPEQKPK PKQCRHYMKG RCHEGDQCNF SHDAIPLTKS VPCAHYACGS  540
CMKGNDCPYD HQLSKYPCSN FVSKGSCYRG RCMFSHQVQT SQDIPTPTNA CKPELKSPLS  600
SGNTNFSTPL NNHGTGSVQQ TNSNSKGIYS HTNVEHKVTD VSQTKPTSAP KGIRFINVAN  660
LSPTTPKQDT VQPNKGNLVH GGTCADKGQN TVEISKKIPA VMPKGVNFLS FGKGSVCSFK  720
LSIQSTAQEM ILKLPQSVNF GLSEHSVSLL NKDDHGKAID ITAQNLPQTA LFSHEISDKN  780
QSMAERMKSR FLEKDSTDDS VRDHSHCKSA QEVNKASDNS QASTVTSATL LASPFVSLQS  840
SEGLVSGCPK QASNIGQRAL ISTLAFAAEH ESNIKMKCPT GASPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469473RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.71730.0flower| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g096500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5730780.0CT573078.1 Medicago truncatula chromosome 5 clone mte1-4f8, COMPLETE SEQUENCE.
GenBankCT9631070.0CT963107.2 Medicago truncatula chromosome 5 clone mte1-34b22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454435.10.0uncharacterized protein LOC11437410 isoform X2
TrEMBLA0A072UGC40.0A0A072UGC4_MEDTR; Putative transcription factor C3H family
STRINGAET008390.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]