PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g095100.1 | ||||||||
Common Name | MTR_5g095100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 101aa MW: 11664.3 Da PI: 10.1485 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.5 | 4.6e-10 | 47 | 90 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 s++kGV+ + +gr+ Ae +dp e ++r +lg+f+ eAa a+ + Medtr5g095100.1 47 SKFKGVWLRQ-WGRYSAENCDPFE---KTRKWLGNFDDDIEAAIAYSK 90 79****8887.*******666432...5**********99****9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-11 | 47 | 94 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.3E-5 | 47 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.141 | 48 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-12 | 48 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0033 | 48 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MVKKTSINKN KKIEASCKKD DSSLNSKDEV ARKLYVKDIN PNKTPTSKFK GVWLRQWGRY 60 SAENCDPFEK TRKWLGNFDD DIEAAIAYSK KKDEFAERKL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g095100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR955010 | 1e-127 | CR955010.2 Medicago truncatula chromosome 5 clone mth2-8n12, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027193434.1 | 1e-18 | ethylene-responsive transcription factor CRF6-like | ||||
Swissprot | Q9M9B2 | 7e-12 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | G7K4J8 | 6e-66 | G7K4J8_MEDTR; AP2 domain class transcription factor | ||||
STRING | AET00714 | 8e-59 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 3e-14 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g095100.1 |
Entrez Gene | 11436666 |
Publications ? help Back to Top | |||
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