PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g094450.1
Common NameMTR_5g094450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 533aa    MW: 60268.2 Da    PI: 4.8711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g094450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.73.5e-1331595322374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +e L++cA+a+s++d+e a++l+++ls+++s +g+p+qRl ay++eAL ar+a+s+s +yk+l+++e  + +s+e l+ +++++e++P+lkf++
  Medtr5g094450.1 159 KEILFTCAKAISENDMETAEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPITATSKELLSHMHVLYEICPYLKFGY 252
                      789******************************************************************************************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN  I ea++ e+++HiiDf+i+qG+QW++L+qaLa +p+gpp++RiTg+++++s   +   l  +gerL+k+Ae+ +v fef++ +  + +
  Medtr5g094450.1 253 MSANGVIAEALKDESEIHIIDFQINQGIQWMSLIQALAGKPGGPPKIRITGFDDSTSAyaRGGGLGIVGERLSKLAESYNVAFEFHA-IGVSPS 345
                      ******************************************************998899999************************.688899 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++le+L++++gEa+aVn++++lh+++de+v+  + +rd++++l k lsPkvv++veqe+++n+ +F++rf+e+++yy a+f+s+++ lpre++
  Medtr5g094450.1 346 EVRLEDLELRRGEAIAVNFAMMLHHVPDEDVHGGKnHRDRLVRLAKCLSPKVVTLVEQESNTNELPFFARFVETMNYYFAVFESIDVALPREHR 439
                      ******************************9987779********************************************************* PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      eri+vE+++l+re+vn+vacegaer+erhe l+kWr+ +++aGF+p+pls++++ +++ ll++++++ y+++e++g+l+lgW+++pL++ SaWr
  Medtr5g094450.1 440 ERINVEQHCLAREVVNLVACEGAERVERHEVLKKWRSCFTMAGFTPYPLSSYINYSIQNLLENYQGH-YTLQEKDGALYLGWMNQPLITSSAWR 532
                      *****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.39132513IPR005202Transcription factor GRAS
PfamPF035141.2E-130159532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MQTSLNHKMS YDSSMFNIEP IRNLDSYCFL QNENLENYSS SDNGSHSTYP SFQALEQNLE  60
SSNNSPVSKL QSKSYTFTSQ NSLEIINDSL ENESCLTHNQ DDLWHKIREL ENAMLGQDAA  120
DMLDIYNDTV IIQQESDPLL LEAEKWNKMI EMISRGDLKE ILFTCAKAIS ENDMETAEWL  180
MSELSKMVSV SGNPIQRLGA YMLEALVARI ASSGSIIYKS LKCKEPITAT SKELLSHMHV  240
LYEICPYLKF GYMSANGVIA EALKDESEIH IIDFQINQGI QWMSLIQALA GKPGGPPKIR  300
ITGFDDSTSA YARGGGLGIV GERLSKLAES YNVAFEFHAI GVSPSEVRLE DLELRRGEAI  360
AVNFAMMLHH VPDEDVHGGK NHRDRLVRLA KCLSPKVVTL VEQESNTNEL PFFARFVETM  420
NYYFAVFESI DVALPREHRE RINVEQHCLA REVVNLVACE GAERVERHEV LKKWRSCFTM  480
AGFTPYPLSS YINYSIQNLL ENYQGHYTLQ EKDGALYLGW MNQPLITSSA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-611625328375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.100410.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g094450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370790.0AC137079.9 Medicago truncatula clone mth2-27d17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617697.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLG7K4E00.0G7K4E0_MEDTR; GRAS family transcription factor
STRINGAET006560.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]