PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g090040.1
Common NameMTR_5g090040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 160aa    MW: 18810.9 Da    PI: 10.2888
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g090040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-09891041126
                      GTS--TTTTT-SS-SS CS
          zf-CCCH  11 rtGtCkyGdrCkFaHg 26 
                      +tGtC+yGd C+FaHg
  Medtr5g090040.1  89 KTGTCPYGDHCQFAHG 104
                      8**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.09284105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-787110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.24988106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-1188110IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-789104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-10111145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7112147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.075116144IPR000571Zinc finger, CCCH-type
SMARTSM003560.23116143IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTMTLASSTL VIEKERNKAA KEKLGLWRED ARRDFTIENH QFRKTRGLKV ILVQWRSQDP  60
RNADWAQQDS LNRVQLYLRW FVYNQGMFKT GTCPYGDHCQ FAHGIGELRQ MIRHPRYKTE  120
VCRMVLAGVV CPCGHRCHFR HALTEQEKAM FLLKLVFKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-16891451470Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.144671e-79glandular trichome| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g090040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0096511e-139CT009651.1 Medicago truncatula chromosome 5 clone mte1-70c15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639055.13e-60zinc finger CCCH domain-containing protein 15
TrEMBLG7KCX81e-117G7KCX8_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAET002531e-117(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-38C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]