PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g088640.1 | ||||||||
Common Name | MTR_5g088640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31627.3 Da PI: 4.8415 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ +v+++G+++W+ +++ g+ R++k+c++rw+++l Medtr5g088640.1 14 KGTWSKEEDEILKAYVEKHGTRNWNEVSKNAGLIRCGKSCRLRWYNHL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.4 | 5e-11 | 67 | 110 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g++++eE + + ++G W++ a++++ gR+++++k++w+ Medtr5g088640.1 67 KGPFSEEEKSKVFEFYIKYGEFKWSKLAHELP-GRSDNDIKNFWN 110 79******************99**********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.938 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.24E-14 | 16 | 61 | No hit | No description |
SMART | SM00717 | 6.1E-12 | 66 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.639 | 66 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-9 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.32E-10 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSSSSSSSST DTKKGTWSKE EDEILKAYVE KHGTRNWNEV SKNAGLIRCG KSCRLRWYNH 60 LQPDVKKGPF SEEEKSKVFE FYIKYGEFKW SKLAHELPGR SDNDIKNFWN ARKRKLEKLG 120 LSPFPDNMEP DHKLNSSQQV EDSQEDEFNI PQLKFRKYPS IFDEINEKLL DVPNMFYNNV 180 GSTSTLIDRG SSIIGTSHIH IPIALPSPCS YLPLPSPMML DENGKKPISL EDDFEANLDD 240 FMDLIDFSNL EDDVEAGSRL FDNDDIYNSN LHDKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 11 | 117 | 4 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g088640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124972 | 1e-159 | AC124972.41 Medicago truncatula clone mth2-24j4, complete sequence. | |||
GenBank | AC130803 | 1e-159 | AC130803.61 Medicago truncatula clone mth2-10g3, complete sequence. | |||
GenBank | CR954185 | 1e-159 | CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003617171.1 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | G7K7T4 | 0.0 | G7K7T4_MEDTR; Myb DNA-binding domain protein | ||||
STRING | AET00130 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15637 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26960.1 | 7e-40 | myb domain protein 81 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g088640.1 |
Entrez Gene | 11421451 |
Publications ? help Back to Top | |||
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