PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g088610.1
Common NameMTR_5g088610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 356aa    MW: 40752.8 Da    PI: 4.8189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g088610.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-141158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+ +v+++G+++W+ +++  g+   + +c+ rw++ l
  Medtr5g088610.1 11 KGKWSKEEDEILKAYVEKHGTRNWDEVSKNTGLAHFGRSCRFRWYNNL 58
                     79******************************9999*********975 PP
2Myb_DNA-binding44.63.4e-1464107145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g++++eE+ +  ++ k++Gg  W++Iar+++ gRt++++k++w+
  Medtr5g088610.1  64 KGPFSKEEENKVFQLRKKFGGFKWSKIARELP-GRTDNDIKNFWN 107
                      79******************99**********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.86662IPR017930Myb domain
SuperFamilySSF466892.96E-258106IPR009057Homeodomain-like
SMARTSM007178.6E-121060IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-181265IPR009057Homeodomain-like
CDDcd001674.04E-101358No hitNo description
PfamPF139215.0E-131474No hitNo description
PROSITE profilePS5129417.39563114IPR017930Myb domain
SMARTSM007172.5E-1463112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2166112IPR009057Homeodomain-like
CDDcd001677.54E-1266107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSSSSSVDTK KGKWSKEEDE ILKAYVEKHG TRNWDEVSKN TGLAHFGRSC RFRWYNNLRP  60
GVKKGPFSKE EENKVFQLRK KFGGFKWSKI ARELPGRTDN DIKNFWNARK RKHKKCGLSP  120
FPDNMELDDE LNGGSSGQQV EDSQENNFDV SNKQFSKLVD DSNMFYNNVG STSTSNHTTS  180
RLIDRGGAGI SPILLTMQSD LPPLPQNPPP METQYQMSGS ISPYTEENWE GLDASRVNSS  240
KINFVDEEGK KPVSSENDFE GNHNDLIATD IWFNYDLYEK DINNLHDKLQ HDVNDSLDTT  300
MYGKGEEPVS SEHDFEVNHD DLMNPKLWFD INELLNDDDN NFDHDKLPQL YMEKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221111227126MYB TRANSFORMING PROTEIN
1mse_C2e-22111124103C-Myb DNA-Binding Domain
1msf_C2e-22111124103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g088610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541850.0CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617168.20.0transcription factor MYB15
TrEMBLG7K7T10.0G7K7T1_MEDTR; Myb DNA-binding domain protein
STRINGAET001270.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15637211
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26950.12e-41myb domain protein 104
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]