PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g088010.1 | ||||||||
Common Name | MTR_5g088010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 28008.7 Da PI: 6.0992 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 62 | 105 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E++l++++ k++G+g+Wk I++++ ++t+ q+ s+ qky Medtr5g088010.1 62 WTDDEHKLFLKGLKKHGKGRWKDISKEFVVTKTPTQIASHAQKY 105 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.179 | 54 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-17 | 55 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-16 | 58 | 109 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.5E-9 | 58 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 61 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.37E-11 | 62 | 106 | No hit | No description |
Pfam | PF00249 | 3.7E-13 | 62 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEQQQEKTGT DIIESGGAVA ILNSNDNNVA TLNSDENNLI QAESGPEESH PPGRVQRKSI 60 HWTDDEHKLF LKGLKKHGKG RWKDISKEFV VTKTPTQIAS HAQKYFIHQN VKDIEKKEKK 120 RKSIHDTTLN KNDTLVTVAV EQRDEIPSVE LQSVIPPQGM QQTQTQQNEI SPMLCLLPIS 180 STIPSVQQQN ELTPVVTAPM EQQHETPAIL NNKDNENLQT QLVLLYPIGS TLPDMNKLEK 240 MCNLLAKEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g088010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124972 | 0.0 | AC124972.41 Medicago truncatula clone mth2-24j4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024639128.1 | 1e-158 | transcription factor MYB1R1 | ||||
Refseq | XP_024639181.1 | 1e-158 | transcription factor MYB1R1 | ||||
TrEMBL | A0A396HVU8 | 0.0 | A0A396HVU8_MEDTR; Putative transcription factor MYB-HB-like family | ||||
TrEMBL | G7K305 | 0.0 | G7K305_MEDTR; MYB-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AET00070 | 1e-180 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16911 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 9e-14 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g088010.1 |
Entrez Gene | 11424541 |
Publications ? help Back to Top | |||
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