PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g085200.1
Common NameMTR_5g085200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 423aa    MW: 46179.9 Da    PI: 8.2546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g085200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.4e-104873126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C +++rtG C yG++C+++H+
  Medtr5g085200.1 48 PGEPDCVYYLRTGMCGYGSNCRYNHP 73
                     5789*********************8 PP
2zf-CCCH37.53.9e-1292116327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C +f++tGtCkyG++Ck++H++
  Medtr5g085200.1  92 QPDCEYFLKTGTCKYGSTCKYHHPK 116
                      789********************96 PP
3zf-CCCH38.12.6e-12139161527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C++++rtG Ck+G  CkF+H++
  Medtr5g085200.1 139 SCPYYMRTGSCKFGVACKFHHPQ 161
                      6********************97 PP
4zf-CCCH39.31.1e-12275300227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++f+ tGtCkyG+ CkF+H++
  Medtr5g085200.1 275 EQPDCKYFMSTGTCKYGSDCKFHHPK 300
                      5799********************96 PP
5zf-CCCH32.21.8e-10320343326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       ++C++++ +G Ck+G++CkF H+
  Medtr5g085200.1 320 NAICSYYRIYGVCKFGPTCKFDHP 343
                      689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-64774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1264775IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-64973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-65274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-45373IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42289117IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5139161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.436273301IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-7273300IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10276300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7277302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6279300IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169317345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5318344IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-8321343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPENRQVFKN AGSNPSGDNI EEAIRRLKIN STRDRDAVPQ SMPYPDRPGE PDCVYYLRTG  60
MCGYGSNCRY NHPANISPVT QYGEELPERV GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG  120
AAPVVFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QQAASFGGAY PVAASPPSTT  180
VTSSGFPYAG GFPAWSMPRM SYLSGQAIQS YVPPFLPSSQ GIMPALSWSN YMGSINPAMP  240
TGFIGSNLVY DYMNPAGETL SGGQAMNSSL PDRPEQPDCK YFMSTGTCKY GSDCKFHHPK  300
ERIAQTLSIN PLGLPMRPGN AICSYYRIYG VCKFGPTCKF DHPVVAISQN YGLPSPTLSV  360
FDASLLTNPR RLSTVQPAET SPSKQSTDKL QQSDTKAATE DSSKQADSTS TSRTPSTESL  420
QE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.94800.0flower| glandular trichome| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g085200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616871.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLG7KH860.0G7KH86_MEDTR; Zinc finger CCCH domain protein
STRINGAES998290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-114C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]