PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g085125.1
Common NameMTR_5g085125
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 171aa    MW: 18779 Da    PI: 5.9529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g085125.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.4e-121564255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+ Vr  k  g   A Ird +     r  +++lg+f+tae+Aa+a++a + +++g
  Medtr5g085125.1 15 RYRCVRKTK-YGCNCAKIRDpW-----RkPYVWLGTFDTAEQAAQAYDATATSYRG 64
                     5999*9888.7888******88.....449************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-201572IPR001471AP2/ERF domain
PROSITE profilePS5103217.0421572IPR001471AP2/ERF domain
SMARTSM003801.5E-161578IPR001471AP2/ERF domain
CDDcd000183.87E-181573No hitNo description
SuperFamilySSF541719.15E-151673IPR016177DNA-binding domain
PfamPF008472.2E-51664IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MCRVKAKPSA TKEIRYRCVR KTKYGCNCAK IRDPWRKPYV WLGTFDTAEQ AAQAYDATAT  60
SYRGNNAITN FPIPYNAANS VVEASRVAVG SSSTVVSRVP VATSIPAIVG EDRHNDFDAS  120
SVDVDDDEED CVITSSFRKP LNIDLNFPPP PNFNDDEEIR ATTLRLSLPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1515811481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g085125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9369470.0CR936947.2 Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454280.11e-122ethylene-responsive transcription factor 3
TrEMBLA0A072UFW71e-121A0A072UFW7_MEDTR; AP2 domain class transcription factor
STRINGAES998241e-58(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-13ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]