PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g085100.1
Common NameMTR_5g085100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 285aa    MW: 29910 Da    PI: 10.3023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g085100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-184593254
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa a++ a+ k++
  Medtr5g085100.1 45 RYRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDTAEEAAHAYDSAAIKFR 93
                     59*******.**********883....5**********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-124594IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103224.02645102IPR001471AP2/ERF domain
SMARTSM003803.4E-3445108IPR001471AP2/ERF domain
CDDcd000183.40E-3145103No hitNo description
Gene3DG3DSA:3.30.730.105.2E-3145102IPR001471AP2/ERF domain
PRINTSPR003678.3E-114657IPR001471AP2/ERF domain
PRINTSPR003678.3E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVRGKGRDYM PRKKIVNSAA STAVKISKAA DPMKSSVTAA VKEIRYRGVR KRPWGRFAAE  60
IRDPWKKARV WLGTFDTAEE AAHAYDSAAI KFRASKAKTN FPIPEHILAA ETAAAAAQNP  120
QPLVAVDNRR AEVLKFVEPE VVQVNWPTSS SMSSTVESLS GPRIVQVVGS SSSSAVSRVP  180
IVAGAGGGAA QPVGAAAARA GKKFHSGCDS STSAVDDDEN CVILSSSTAS VRKPMVQAPA  240
QAHVHAPAQV PAQVQVPAQA QAQAQVQALV FAIDLNLPPP MDDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2146103664ATERF1
3gcc_A1e-2146103664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213RGKGRDYMPRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.182170.0leaf| pod| root| seed
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g085100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9369470.0CR936947.2 Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616864.10.0ethylene-responsive transcription factor 3
SwissprotO803399e-35ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLG7KH790.0G7KH79_MEDTR; AP2 domain class transcription factor
STRINGAES998220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-25erf domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]