PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g085070.2 | ||||||||
Common Name | MTR_5g085070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 29849.8 Da PI: 8.4657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 50 | 98 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y+GVr ++ +gr++AeIrd ++ ++r++lg+++tae+Aa a++ a+ k++ Medtr5g085070.2 50 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTYDTAEQAALAYDSAAIKFR 98 59*******.**********883....5**********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.5E-34 | 50 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-30 | 50 | 108 | No hit | No description |
PROSITE profile | PS51032 | 23.63 | 50 | 107 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 50 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-21 | 50 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MVRVKGRDYM PRKKIVNLPV VARYAAGSTA VGKSEAAEPM KSSVTVKEIR YRGVRKRPWG 60 RFAAEIRDPW KKTRVWLGTY DTAEQAALAY DSAAIKFRAS KAKTNFPIPE HILAAAAETA 120 AVAAQNPQPP AAVDNRPAEV LKFVEPDVVQ VNWPTSSGMS STVESFSGPR IVQLVGSSSS 180 SVVSRVPTVG GGAGGGVAQA VGGAGAGAGE DFHSGCDSSS SVVDDDEDCV ILSSSAASVR 240 KPPVQAHALA QAQVHAQAQV FAIDLNLPPP MDDEEVIRVT TLCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 51 | 108 | 6 | 64 | ATERF1 |
3gcc_A | 3e-21 | 51 | 108 | 6 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 13 | RVKGRDYMPRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18217 | 0.0 | leaf| pod| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g085070.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR936947 | 0.0 | CR936947.2 Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616861.1 | 0.0 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | G7KH76 | 0.0 | G7KH76_MEDTR; Ethylene response factor | ||||
STRING | AES99819 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-33 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g085070.2 |
Entrez Gene | 11431233 |
Publications ? help Back to Top | |||
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