PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g085070.2
Common NameMTR_5g085070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 285aa    MW: 29849.8 Da    PI: 8.4657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g085070.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-185098254
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+++tae+Aa a++ a+ k++
  Medtr5g085070.2 50 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTYDTAEQAALAYDSAAIKFR 98
                     59*******.**********883....5**********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-3450113IPR001471AP2/ERF domain
CDDcd000181.01E-3050108No hitNo description
PROSITE profilePS5103223.6350107IPR001471AP2/ERF domain
PfamPF008471.2E-125099IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2150108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3050107IPR001471AP2/ERF domain
PRINTSPR003671.7E-105162IPR001471AP2/ERF domain
PRINTSPR003671.7E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVRVKGRDYM PRKKIVNLPV VARYAAGSTA VGKSEAAEPM KSSVTVKEIR YRGVRKRPWG  60
RFAAEIRDPW KKTRVWLGTY DTAEQAALAY DSAAIKFRAS KAKTNFPIPE HILAAAAETA  120
AVAAQNPQPP AAVDNRPAEV LKFVEPDVVQ VNWPTSSGMS STVESFSGPR IVQLVGSSSS  180
SVVSRVPTVG GGAGGGVAQA VGGAGAGAGE DFHSGCDSSS SVVDDDEDCV ILSSSAASVR  240
KPPVQAHALA QAQVHAQAQV FAIDLNLPPP MDDEEVIRVT TLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2151108664ATERF1
3gcc_A3e-2151108664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213RVKGRDYMPRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.182170.0leaf| pod| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g085070.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9369470.0CR936947.2 Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616861.10.0ethylene-responsive transcription factor 3
TrEMBLG7KH760.0G7KH76_MEDTR; Ethylene response factor
STRINGAES998190.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-33ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]