PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g083960.1 | ||||||||
Common Name | MTR_5g083960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21826.7 Da PI: 7.4062 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.9 | 1.1e-40 | 39 | 138 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l el Medtr5g083960.1 39 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLIGEL 132 7******************************************************************************************999 PP DUF260 95 allkee 100 ++++ee Medtr5g083960.1 133 NAIREE 138 999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.123 | 38 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-40 | 39 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSRERGRFFD EIGKKREGDE SFQKGRMLGP SGTLNTTTPC AACKLLRRRC AQECPFSPYF 60 SPHEPQKFAS VHKVFGASNV SKLLLEVPEN QRADAANSLV YEANVRLRDP VYGCMGAISS 120 LQQQVQSLIG ELNAIREEIH KYKLMEANML PSSEDVSIAT LPPSTSLPML PSSIYTQQTN 180 PTSYSSISND HISYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 33 | 159 | 5 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 33 | 159 | 5 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g083960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR938710 | 0.0 | CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616758.1 | 1e-145 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 3e-70 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | G7KH28 | 1e-144 | G7KH28_MEDTR; LOB domain protein | ||||
STRING | AES99716 | 1e-145 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-71 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g083960.1 |
Entrez Gene | 11430462 |
Publications ? help Back to Top | |||
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