PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g083330.1 | ||||||||
Common Name | MTR_5g083330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 32860.6 Da PI: 4.7913 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+WvAeIr+p+ + r lg+f ta+eAa a++ a+++++g Medtr5g083330.1 34 KYRGVRQRT-WGKWVAEIREPN----SgSRLKLGTFPTAQEAALAYDSAARAMYG 83 8*****999.**********93....35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.68E-30 | 34 | 92 | No hit | No description |
PROSITE profile | PS51032 | 20.784 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-33 | 34 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-12 | 34 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 34 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 34 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MCGESLTKWK KYNAQLYAGK DDGIPKLKHL QKNKYRGVRQ RTWGKWVAEI REPNSGSRLK 60 LGTFPTAQEA ALAYDSAARA MYGTSARLNL PDISDYSSVK EYLMDSSSAA ASRSSSLATM 120 PATSEKTTAS SHSEVCVAEA VNEIPKLPVN MNNSVEIVEF GGGARYDKPI DEYGLRQSLD 180 LGQIGSPEEK SFSMDELLGH IDDNLIDEYG AMQSLDFVQI GSPKESNNPH VGTTLSLFYE 240 LENRDAMLSG ILPHAKHTPS GVDYGLPLNF NGEGEDTPFL DLDYDLNQDS RGMQGRKTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-17 | 35 | 91 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g083330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU302335 | 0.0 | CU302335.1 Medicago truncatula chromosome 5 clone mth2-155g22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616701.1 | 1e-110 | dehydration-responsive element-binding protein 2A | ||||
Refseq | XP_024639092.1 | 1e-110 | dehydration-responsive element-binding protein 2A | ||||
TrEMBL | G7K778 | 0.0 | G7K778_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | AES99658 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 7e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g083330.1 |
Entrez Gene | 11420724 |
Publications ? help Back to Top | |||
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