PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g082830.1
Common NameMTR_5g082830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 684aa    MW: 74953.3 Da    PI: 6.5703
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g082830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07262282526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Medtr5g082830.1 262 PCPEFRK-GSCQKGDSCEYAHG 282
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.12E-1527159IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.5E-1728177IPR020683Ankyrin repeat-containing domain
CDDcd002049.90E-1371170No hitNo description
PROSITE profilePS5029714.07972152IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-772138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03372102IPR002110Ankyrin repeat
PROSITE profilePS5008810.74107142IPR002110Ankyrin repeat
SMARTSM002480.033107139IPR002110Ankyrin repeat
PROSITE profilePS5010313.544257284IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5262284IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5262282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4289321IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.244292316IPR000571Zinc finger, CCCH-type
SMARTSM0035612292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MCSGSKSKLS SSDCAMEDKL QMGIHNSSIL LELSASDDFD AFKREVDEKD LDVNEEGFWY  60
GRRIGSKKME SEKRTPLMIA SMFGSTRVVE YIVSAGKVDV NGVCGSDMAT ALHCAVAGGS  120
EFLLEVVKLL LDAGADADCL DASGNKPVDL IAPAFNSSSK SRRKVLEMFL RGEVSAELIQ  180
GEMDAPFSLK KEGGDKKEFP IDISLPDINN GVYGSDEFRM YSFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYPYSC VPCPEFRKGS CQKGDSCEYA HGVFESWLHP AQYRTRLCKD  300
ETGCNRKVCF FAHRPEELRP VYASTGSAMP SPKSYSASGM DMTSMSPLSL SSSSLPMSTV  360
STPPMSPLAG SSSPKSGNMW QNKLNLTPPS LQLPGSRLKS ALSARDLDLE MELLGLDSPR  420
RQQQQQQQQQ LIEEIARISS PSFRNSEFNR IADLNPTNLD DLLASADPNL LSQLHGLSMQ  480
PSTPTQQMHS PSAMQMRQNM NMGQNMNHLR ASYPSNNMPS SPVRKPSPYG FDSSAAVAAA  540
VMNSRSAAFA KQRSQSFIDR GAATHHLGLS PPSNPSCRVS SGLSDWGSPT GKLDWGVNGD  600
ELNKLRKSAS FGFRNNGPAA PTASQHAEPD VSWVNSLVKD VPSDNSGVYG AENMRQLQQY  660
DLSRDVLPPW VEQMYKEQEQ MVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.121300.0glandular trichome| leaf| pod| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g082830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9141300.0CU914130.1 Medicago truncatula chromosome 5 clone mth4-73m1, COMPLETE SEQUENCE.
GenBankCU9141310.0CU914131.2 Medicago truncatula chromosome 5 clone mth4-85a6, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616654.20.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLG7K2520.0G7K252_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGAES996120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-178C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]