PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g080470.1 | ||||||||
Common Name | MTR_5g080470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 193aa MW: 21179.6 Da PI: 5.9986 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.4 | 9.8e-38 | 7 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkCa+dCv+apyf eq +++f +vhk++Gasnv++ll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++l++e Medtr5g080470.1 7 SCGACKFLRRKCASDCVFAPYFSYEQaSSHFSAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEE 100 6***********************9978****************************************************************** PP DUF260 94 lallk 98 ++ l+ Medtr5g080470.1 101 IDILG 105 98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.423 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-36 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTGFGSSCGA CKFLRRKCAS DCVFAPYFSY EQASSHFSAV HKVYGASNVS RLLSHLPIQN 60 RSDAAITISY EALARMQDPI YGCVAHIYAL QHQVASLQEE IDILGSVMAN SSVSVVNCGN 120 VQAPMNSNNG TQYYHNQSFE SYLDMELIPN AHGFPEPLYG DSNSNPLEKF LSGIDQEGFL 180 NHPWFKHNNG DI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g080470.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC129090 | 1e-169 | AC129090.23 Medicago truncatula clone mth2-14i8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616452.1 | 1e-143 | LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 6e-57 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | G7KGT3 | 1e-141 | G7KGT3_MEDTR; LOB domain protein | ||||
STRING | AES99410 | 1e-142 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-55 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g080470.1 |
Entrez Gene | 11432238 |
Publications ? help Back to Top | |||
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