PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g079560.1 | ||||||||
Common Name | MTR_5g079560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 27131.1 Da PI: 9.7467 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.7 | 1.1e-09 | 100 | 179 | 7 | 90 |
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A ++GF+++++ks++ + t++C ++g+ ++ k++++ + + +++ +++C +lk ek +++w ++ l HnH+la Medtr5g079560.1 100 AARAGFTISTDKSST-----IVPYMTMQCERSGEYKPPKTRKKPKLEGTSSRKCNCPFRLKCFFEKkTQEWWIAMLCGVHNHDLA 179 889999999887655.....48999*************99989999999999******9999877779***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-6 | 100 | 179 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAEDGVEAKP GKNKASGVGV GSGEGKPTND VKFKVKIPFQ VEAHIVHNQA KPVPTGNFEE 60 KPKPVPTGVR IIQVNTGSFF TTNERWKDRE ELLGWIRQQA ARAGFTISTD KSSTIVPYMT 120 MQCERSGEYK PPKTRKKPKL EGTSSRKCNC PFRLKCFFEK KTQEWWIAML CGVHNHDLAS 180 NLSGRLCNLL GGWLCEDDYL ARFDEGTNET RNEKGVISNL KMTKGSKMAN AKLEKIQDTT 240 YI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g079560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT573216 | 0.0 | CT573216.1 Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7KBN4 | 0.0 | G7KBN4_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES99337 | 0.0 | (Medicago truncatula) |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g079560.1 |
Entrez Gene | 11438418 |
Publications ? help Back to Top | |||
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