PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g079220.1
Common NameMTR_5g079220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 277aa    MW: 31744.1 Da    PI: 8.0507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g079220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-172370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+ + +++G g W++++++ g++R++k+c++rw++yl
  Medtr5g079220.1 23 KGAWTYEEDKLLKACMQKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 70
                     79********************************************97 PP
2Myb_DNA-binding47.93.2e-1576121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r +++++E + +++++k+lG++ W++Ia++++ gRt++++k++w+++l
  Medtr5g079220.1  76 RESFSEDEVDMILRLHKLLGNR-WSLIAARLP-GRTANDVKNYWHTHL 121
                      678*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-221573IPR009057Homeodomain-like
PROSITE profilePS5129417.2641870IPR017930Myb domain
SuperFamilySSF466891.6E-2820117IPR009057Homeodomain-like
SMARTSM007175.4E-132272IPR001005SANT/Myb domain
PfamPF002491.1E-152370IPR001005SANT/Myb domain
CDDcd001671.14E-92570No hitNo description
PROSITE profilePS5129424.74371125IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2474126IPR009057Homeodomain-like
SMARTSM007178.5E-1675123IPR001005SANT/Myb domain
PfamPF002493.7E-1476121IPR001005SANT/Myb domain
CDDcd001672.13E-1178121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPLFVCGQKQ VYMEKCKTRG VRKGAWTYEE DKLLKACMQK YGEGKWHLVP QRAGLNRCRK  60
SCRLRWLNYL NPTINRESFS EDEVDMILRL HKLLGNRWSL IAARLPGRTA NDVKNYWHTH  120
LRKKMVSRKE EKKENEKPKE SMQTHEVIKP QPRTFSSHSP WLNGKYNNFV TPIVTVSTND  180
GNVAKDSEVD TILPINGDGD SAAQPYLENP TLSSMWWESL LNVSNDKIGS CSLLLPEEYS  240
KLNVENFLAE GPSTVGDFSW DSTICEFDSL LDDILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24231257108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g079220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1999970.0FJ199997.1 Medicago truncatula MYB transcription factor LAP4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616359.10.0transcription factor MYB113
SwissprotQ9FNV91e-62MY113_ARATH; Transcription factor MYB113
TrEMBLG7K1W90.0G7K1W9_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES993170.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-63myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]