PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g079120.1
Common NameMTR_5g079120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 307aa    MW: 35363.4 Da    PI: 9.2585
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g079120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-1763110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd ll+ +++++G g W++I+++ g++R++k+c++rw +yl
  Medtr5g079120.1  63 KGAWTYEEDNLLKAYIHKYGEGKWHLIPKRTGLNRCRKSCRLRWVNYL 110
                      79********************************************97 PP
2Myb_DNA-binding44.82.9e-14117161248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       + T++E + +++++++lG++ W++Ia++++  Rt++++k++w+++l
  Medtr5g079120.1 117 ESITEDEADMIIRLHNLLGNR-WSLIAARLP-SRTANDVKNYWNTHL 161
                      5679*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2257113IPR009057Homeodomain-like
PROSITE profilePS5129425.38758114IPR017930Myb domain
SuperFamilySSF466891.95E-2860157IPR009057Homeodomain-like
SMARTSM007172.5E-1462112IPR001005SANT/Myb domain
PfamPF002495.4E-1663110IPR001005SANT/Myb domain
CDDcd001676.89E-1165110No hitNo description
Gene3DG3DSA:1.10.10.608.8E-23114165IPR009057Homeodomain-like
SMARTSM007174.7E-15115163IPR001005SANT/Myb domain
PROSITE profilePS5129418.483115165IPR017930Myb domain
PfamPF002493.2E-13118161IPR001005SANT/Myb domain
CDDcd001673.56E-10120161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAREDNRVAV AIGQACCRQK LLAQQMNALV PQAIENQKQF KVSRVLGKRI RKVRMENKRG  60
LRKGAWTYEE DNLLKAYIHK YGEGKWHLIP KRTGLNRCRK SCRLRWVNYL NPNINRESIT  120
EDEADMIIRL HNLLGNRWSL IAARLPSRTA NDVKNYWNTH LRKKVLSESV EKNEKERPKE  180
TMKAHEVIIP RPITLSTHSS FMTQPILNSN NDSKILMDRD GSSEIMVSNQ IGRDCASASQ  240
QSLGNVPVPC GMWSDSLWNL GEQVNIDKIG SCSSLQEENN FNMEVPNVDD FFWDFNLDDF  300
DFLMNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24611655108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g079120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022090.0FP102209.3 Medicago truncatula chromosome 5 clone mtf83-137p9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639040.10.0transcription factor WER
TrEMBLG7K1W10.0G7K1W1_MEDTR; Myb-like DNA-binding domain protein
STRINGAES993090.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-58myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]