PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g078950.1
Common NameMTR_5g078950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 266aa    MW: 30460.7 Da    PI: 9.3663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g078950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ll+ +++++G g W+ ++++ g+ R++k+c++rw++yl
  Medtr5g078950.1  9 RGAWTYEEDKLLKACINKYGEGKWHFVPQRAGLSRCRKSCRLRWLNYL 56
                     89********************************************97 PP
2Myb_DNA-binding41.92.3e-1363106247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ ++E +l++++ k+lG++ W++Ia++++ gRt++++k++w++ 
  Medtr5g078950.1  63 ESFAEDEVDLILRLQKLLGNR-WSLIAARLP-GRTANDVKNYWHTN 106
                      677899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.804456IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-20658IPR009057Homeodomain-like
SuperFamilySSF466891.83E-277103IPR009057Homeodomain-like
SMARTSM007172.3E-13858IPR001005SANT/Myb domain
PfamPF002492.0E-15956IPR001005SANT/Myb domain
CDDcd001676.07E-101156No hitNo description
PROSITE profilePS5129423.5657111IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2159111IPR009057Homeodomain-like
SMARTSM007171.0E-1361109IPR001005SANT/Myb domain
PfamPF002494.4E-1262106IPR001005SANT/Myb domain
CDDcd001678.50E-1067107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDNTRAVKRG AWTYEEDKLL KACINKYGEG KWHFVPQRAG LSRCRKSCRL RWLNYLSPNI  60
KRESFAEDEV DLILRLQKLL GNRWSLIAAR LPGRTANDVK NYWHTNLRKK LALEKEKKEK  120
EKHKETMKTH EVIKPQPRIF STHSPWLNKK QNNFVTQPVL ASNKDGNVPR DSNASLGTTV  180
SNQVGRDYVS SSQPSIDNVA ILCSKKDNVA IPCAMLTDNL WNLGEPVDSE KIGSCSSLQE  240
EYFSMEFSTI DYSFWDSNLC DFISL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2391117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g078950.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022110.0FP102211.2 Medicago truncatula chromosome 5 clone mtf83-91d9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616346.10.0transcription factor WER
SwissprotQ9FNV95e-54MY113_ARATH; Transcription factor MYB113
TrEMBLG7K1V60.0G7K1V6_MEDTR; Myb-like DNA-binding domain protein
STRINGAES993040.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-54myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]