PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g078930.1
Common NameMTR_5g078930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 220aa    MW: 25592.5 Da    PI: 10.304
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g078930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-181258248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       WT eEd+ll+ +++++G g W++I+++ g++R++k+c++rw++yl
  Medtr5g078930.1 12 RTWTSEEDKLLKAYINKYGEGKWHLIPKRAGLNRCRKSCRLRWLNYL 58
                     68*******************************************97 PP
2Myb_DNA-binding45.41.9e-1466109348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++++E + +++++++lG++ W++Ia++++ gRt++++k++w+++l
  Medtr5g078930.1  66 IFSEDEADMILRLHNLLGNR-WTLIAARLQ-GRTANDVKNYWNTHL 109
                      599*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.636662IPR017930Myb domain
SuperFamilySSF466892.32E-289105IPR009057Homeodomain-like
SMARTSM007172.8E-151060IPR001005SANT/Myb domain
PfamPF002492.8E-161258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-221365IPR009057Homeodomain-like
CDDcd001678.30E-121358No hitNo description
PROSITE profilePS5129416.69763113IPR017930Myb domain
SMARTSM007171.0E-1363111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2166112IPR009057Homeodomain-like
PfamPF002491.7E-1367109IPR001005SANT/Myb domain
CDDcd001671.30E-967109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MCMENSRIKR KRTWTSEEDK LLKAYINKYG EGKWHLIPKR AGLNRCRKSC RLRWLNYLNP  60
TINREIFSED EADMILRLHN LLGNRWTLIA ARLQGRTAND VKNYWNTHLK NKDVSRAKEK  120
KEKDNPKEII KAHEVIKPRP LTFSTHSPWL NGKHNFVTHP ILGKVPRYHD ASSDTMVPDQ  180
IGRDCASDSQ PRLGNAPILC VQCGCSSLQE QNYKVFKWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22111127107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g078930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022110.0FP102211.2 Medicago truncatula chromosome 5 clone mtf83-91d9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616344.21e-164transcription factor MYB114
SwissprotQ9FNV91e-51MY113_ARATH; Transcription factor MYB113
TrEMBLG7K1V41e-163G7K1V4_MEDTR; Myb-like DNA-binding domain protein
STRINGAES993021e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-54myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]