PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g078910.1
Common NameMTR_5g078910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 301aa    MW: 34340.9 Da    PI: 9.2288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g078910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+ +++++G g W++++++ g++R++k+c++rw +yl
  Medtr5g078910.1  9 KGAWTYEEDKLLKACIQKYGEGKWHLVSQRAGLNRCRKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding42.81.2e-1363107248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++ ++E + +++++k+lG++ W++Ia++++ gRt++++k++w+++l
  Medtr5g078910.1  63 ESFAEDEVDMILRLHKLLGNR-WSLIAARLP-GRTANDVKNFWHTHL 107
                      66789999*************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.922456IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-21558IPR009057Homeodomain-like
SuperFamilySSF466893.45E-286103IPR009057Homeodomain-like
SMARTSM007173.0E-12858IPR001005SANT/Myb domain
PfamPF002494.4E-16956IPR001005SANT/Myb domain
CDDcd001677.45E-111156No hitNo description
PROSITE profilePS5129422.95357111IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2259111IPR009057Homeodomain-like
SMARTSM007173.8E-1461109IPR001005SANT/Myb domain
PfamPF002491.6E-1262107IPR001005SANT/Myb domain
CDDcd001674.63E-1067107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEKTRSLRKG AWTYEEDKLL KACIQKYGEG KWHLVSQRAG LNRCRKSCRL RWVNYLCPNI  60
KRESFAEDEV DMILRLHKLL GNRWSLIAAR LPGRTANDVK NFWHTHLRKK VVSETKEKKE  120
KEKPKETMKA HEVIKPQPRI FSTHSSWLNR KHVNFVSQPM LASNKDGNVS TKHVNFVSQP  180
MLASNKDGNV STKHVNFVSQ PMLASNKDGN VSKDRDNRET MVTYQNGRDC ASASQPSIDN  240
VPIPCALSSD NLWDLGEQVG SEQIGSGSSI QENFNMEFLD VDDSLWNSNL CDFDSLLDLY  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2471115108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g078910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022110.0FP102211.2 Medicago truncatula chromosome 5 clone mtf83-91d9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640738.11e-174transcription factor MYB90
TrEMBLG7K1V20.0G7K1V2_MEDTR; R2R3-myb transcription factor
STRINGAES993000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-55myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]