PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g078860.1
Common NameMTR_5g078860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 307aa    MW: 35356.9 Da    PI: 8.7808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g078860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.6e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+ +++++G g W++++++ g++R++k+c++rw++yl
  Medtr5g078860.1  9 KGAWTYEEDNLLKACIHKYGEGKWHLVPKRTGLNRCRKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding43.19.6e-1463106247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ ++E + +++++k+lG++ W++Ia++++ gRt++++k++w++ 
  Medtr5g078860.1  63 ESFAEDEIDMILRLHKLLGNK-WSLIAARLP-GRTANDVKNYWHTN 106
                      677899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.898460IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-21558IPR009057Homeodomain-like
SuperFamilySSF466898.59E-286103IPR009057Homeodomain-like
SMARTSM007175.2E-14858IPR001005SANT/Myb domain
PfamPF002497.8E-16956IPR001005SANT/Myb domain
CDDcd001673.00E-101156No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2159111IPR009057Homeodomain-like
SMARTSM007179.8E-1461109IPR001005SANT/Myb domain
PROSITE profilePS5129417.61761111IPR017930Myb domain
PfamPF002491.2E-1262106IPR001005SANT/Myb domain
CDDcd001674.06E-967107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEKARGLRKG AWTYEEDNLL KACIHKYGEG KWHLVPKRTG LNRCRKSCRL RWLNYLNPAI  60
NRESFAEDEI DMILRLHKLL GNKWSLIAAR LPGRTANDVK NYWHTNLRKK VIPRKEEKEE  120
KEKSKESMIK SHEVIKPRPR TFSTHSLWLK KKHNFVSNGS ATKLVISSED GNVPRECDKT  180
TLPNLIDSSS SHSPWLKKNH SLPTTLMASR EDVNIPRECD KTTLPNVGDA QTCVGNDPSS  240
TTWWESLLNM DEERSNEKID SSSLLPKENF TLEFSNVEDF FNNGPTVSDS DWDSNLYDFN  300
FFGVFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2471115108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g078860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023440.0CU302344.1 Medicago truncatula chromosome 5 clone mte1-12c12, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616339.20.0transcription repressor MYB6
TrEMBLG7K1U90.0G7K1U9_MEDTR; R2R3-myb transcription factor
STRINGAES992970.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-59myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]