PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g078800.1 | ||||||||
Common Name | MTR_5g078800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 30724.7 Da PI: 8.6717 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+d+++++G g W++++++ g++R++k+c++rw +yl Medtr5g078800.1 9 KGAWTYEEDNLLKDCIQKYGEGKWHLVPKRAGLNRCRKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 62 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++ +E + +++++k+lG++ W++Ia++++ gRt++++k++w++ Medtr5g078800.1 62 RESFSHDEIDMILRLHKLLGNR-WSLIAARLP-GRTANDVKNYWHTN 106 6789******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.257 | 4 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-22 | 5 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.29E-28 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-14 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.89E-10 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 60 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.955 | 61 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.04E-10 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MEKTRGLRKG AWTYEEDNLL KDCIQKYGEG KWHLVPKRAG LNRCRKSCRL RWVNYLNPAI 60 NRESFSHDEI DMILRLHKLL GNRWSLIAAR LPGRTANDVK NYWHTNLRKK VIPRKEENEE 120 KEKSKESMIK SHEVIKPRPR TFSTHSLWLK KKRNFVSDGS ATKLVISSED GNVPRECDKT 180 TLPNIGDAQP CVGNVPLSTM WWESLLNVDE ERNNEKNGSC SLLQEENFTL EFSNVEEFFT 240 NGSTASDSFW DFNLCDINNS SGVFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 7 | 111 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g078800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU302344 | 0.0 | CU302344.1 Medicago truncatula chromosome 5 clone mte1-12c12, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616333.1 | 0.0 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 5e-60 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | G7K1U3 | 0.0 | G7K1U3_MEDTR; R2R3-myb transcription factor | ||||
STRING | AES99291 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-60 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g078800.1 |
Entrez Gene | 11432112 |
Publications ? help Back to Top | |||
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