PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g075570.1
Common NameMTR_5g075570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 284aa    MW: 32289.3 Da    PI: 9.521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g075570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-18123172255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr+++ +g+W+AeIrdp    +r kr +lg+f taeeAa+ +++ +  l+g
  Medtr5g075570.1 123 NFRGVRQRP-WGKWAAEIRDP----IRrKRLWLGTFSTAEEAAAEYDRVAVMLHG 172
                      69*******.**********7....246********************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381238.7E-1361283IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541711.44E-20122181IPR016177DNA-binding domain
CDDcd000184.56E-31122182No hitNo description
PfamPF008474.0E-11123170IPR001471AP2/ERF domain
PROSITE profilePS5103222.326123180IPR001471AP2/ERF domain
SMARTSM003804.6E-33123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-27123180IPR001471AP2/ERF domain
PRINTSPR003675.0E-10124135IPR001471AP2/ERF domain
PRINTSPR003675.0E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSLQKLKLST PSSIFEENPS TKTKRKPKRK LVRIIITDHD ATDSDSSGDQ EREKNNQTTK  60
RRKPKREILH INMHCPVPNS SLSFSSPSSS SSLVSPEKTH KKLNRVRRPR KPPTSVVTRR  120
HSNFRGVRQR PWGKWAAEIR DPIRRKRLWL GTFSTAEEAA AEYDRVAVML HGSNAVTNYP  180
ITQVEVKTEI EKDFEVTPPV SSGNSDRGGY SDALSSPTSV LPYDCDSTPF DGFRYVDVDA  240
FGFHIDAPLS LPEVNVPLTC HQKLEKEEKF EEFDLDEFMT WPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-19123181261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-19123181564ATERF1
3gcc_A3e-19123181564ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12330KRKPKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143170.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g075570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1419230.0AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence.
GenBankAC1496000.0AC149600.8 Medicago truncatula strain A17 clone mte1-41j24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616051.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLG7K0V40.0G7K0V4_MEDTR; Integrase-type DNA-binding superfamily protein
STRINGAES990090.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-32cytokinin response factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]